Browse our latest Computational and Systems Biology articles

Page 45 of 128
    1. Biochemistry and Chemical Biology
    2. Computational and Systems Biology

    A novel fold for acyltransferase-3 (AT3) proteins provides a framework for transmembrane acyl-group transfer

    Kahlan E Newman, Sarah N Tindall ... Marjan W Van Der Woude
    The modelled structure of a membrane protein supports the hypothesis that it has a new fold with a channel that allows a chemical group to cross the membrane to decorate surface structures.
    1. Computational and Systems Biology
    2. Immunology and Inflammation

    Longitudinal analysis of invariant natural killer T cell activation reveals a cMAF-associated transcriptional state of NKT10 cells

    Harry Kane, Nelson M LaMarche ... Lydia Lynch
    Invariant natural killer T (iNKT) cells have some shared yet some distinct metabolic and transcriptional programs for their in vivo effector functions, including a novel population of memory-like regulatory iNKT cells.
    1. Computational and Systems Biology
    2. Structural Biology and Molecular Biophysics

    Evolutionary divergence in the conformational landscapes of tyrosine vs serine/threonine kinases

    Joan Gizzio, Abhishek Thakur ... Ronald M Levy
    Computational methods based on both sequence and structure show evidence that tyrosine kinases are energetically biased to populate the 'DFG-out' type-II inhibitor binding conformation relative to serine/threonine kinases.
    1. Cell Biology
    2. Computational and Systems Biology

    Patterns of interdivision time correlations reveal hidden cell cycle factors

    Fern A Hughes, Alexis R Barr, Philipp Thomas
    Bayesian inference identifies hidden dynamics underlying noisy cell division data.
    1. Cancer Biology
    2. Computational and Systems Biology

    Predicting progression-free survival after systemic therapy in advanced head and neck cancer: Bayesian regression and model development

    Paul R Barber, Rami Mustapha ... Tony Ng
    Circulating immune cells reflect intra-tumoural immunity and can predict response to systemic therapy in head and neck cancer.
    1. Computational and Systems Biology
    2. Physics of Living Systems

    Metrics of high cofluctuation and entropy to describe control of cardiac function in the stellate ganglion

    Nil Z Gurel, Koustubh B Sudarshan ... Olujimi A Ajijola
    Networked cardiac control, revealed through analysis of extended baseline-state multi-channel recordings, differentiates heart failure and normal regimes highlighting the promise of peripheral neurally based clinical interventions.
    1. Computational and Systems Biology
    2. Genetics and Genomics

    Heritability enrichment in context-specific regulatory networks improves phenotype-relevant tissue identification

    Zhanying Feng, Zhana Duren ... Yong Wang
    Integrating chromatin accessibility and gene expression data into context-specific regulatory networks can provide better regulatory categories for heritability enrichment and relevant tissue identification.
    1. Computational and Systems Biology
    2. Neuroscience

    Emergent color categorization in a neural network trained for object recognition

    Jelmer P de Vries, Arash Akbarinia ... Karl R Gegenfurtner
    Human-like color categories emerge in a Deep Neural Network trained only on object recognition.
    1. Computational and Systems Biology
    2. Structural Biology and Molecular Biophysics

    Deep learning-driven insights into super protein complexes for outer membrane protein biogenesis in bacteria

    Mu Gao, Davi Nakajima An, Jeffrey Skolnick
    An example of a deep learning-based strategy to discover novel protein-protein interactions and predict their complex structures at high accuracy.
    1. Computational and Systems Biology
    2. Genetics and Genomics

    Osteoporosis: Finding the genes for fragile bones

    Erika Kague
    Combining transcriptomic data with the analysis of large genome-wide association studies helps identify genes that are likely important for regulating bone mineral density.
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