Browse our latest Structural Biology and Molecular Biophysics articles

Page 15 of 186
    1. Computational and Systems Biology
    2. Structural Biology and Molecular Biophysics

    Reliable protein–protein docking with AlphaFold, Rosetta, and replica exchange

    Ameya Harmalkar, Sergey Lyskov, Jeffrey J Gray
    New protein-protein docking algorithm combining deep learning (AlphaFold2) and physics (Rosetta and enhanced sampling) achieves high success rates.
    1. Structural Biology and Molecular Biophysics

    A comprehensive antigen-antibody complex database unlocking insights into interaction interface

    Yuwei Zhou, Wenwen Liu ... Jian Huang
    AACDB provides a comprehensive, manually curated antigen-antibody interface dataset with rich metadata, interaction annotations, and therapeutic target annotations to advance antibody drug development.
    1. Structural Biology and Molecular Biophysics

    Structural and dynamic impacts of single-atom disruptions to guide RNA interactions within the recognition lobe of Geobacillus stearothermophilus Cas9

    Helen B Belato, Alexa L Knight ... George P Lisi
    Solution biophysics defines the influence of local dynamics and allosteric regulation on guide RNA binding affinity and DNA cleavage specificity in a thermophilic Cas9 from Geobacillus stearothermophilus.
    1. Structural Biology and Molecular Biophysics

    Structure, function and assembly of soybean primary cell wall cellulose synthases

    Ruoya Ho, Pallinti Purushotham ... Jochen Zimmer
    Structural and biochemical analyses suggest the association of homotrimeric CesAs of different isoforms into cellulose biosynthesis complexes via their class-specific regions.
    1. Structural Biology and Molecular Biophysics

    ATP-release pannexin channels are gated by lysophospholipids

    Erik Henze, Russell N Burkhardt ... Toshimitsu Kawate
    Lysophospholipids directly and reversibly activate pannexin channels, triggering the release of signaling molecules critical for inflammation.
    1. Structural Biology and Molecular Biophysics

    Hidden GPCR structural transitions addressed by multiple walker supervised molecular dynamics (mwSuMD)

    Giuseppe Deganutti, Ludovico Pipito ... Christopher Arthur Reynolds
    Multiple walker supervised molecular dynamics simulations deliver insights on glucagon-like peptide 1 receptor activation, Gs protein binding, and guanosine diphosphate release from the Gsα subunit using an adaptive sampling approach.
    1. Structural Biology and Molecular Biophysics

    Engineering cardiolipin binding to an artificial membrane protein reveals determinants for lipid-mediated stabilization

    Mia L Abramsson, Robin A Corey ... Michael Landreh
    Bulding a cardiolipin binding site into a computationally designed transmembrane protein uncovers how proteins can recognize specific lipids and use them to regulate their function.
    1. Immunology and Inflammation
    2. Structural Biology and Molecular Biophysics

    Simultaneous polyclonal antibody sequencing and epitope mapping by cryo electron microscopy and mass spectrometry

    Douwe Schulte, Marta Šiborová ... Joost Snijder
    Germline V-gene usage can be inferred from cryoEM reconstructions of antigen-antibody complexes to guide de novo antibody sequencing of complex mixtures by mass spectrometry.
    1. Biochemistry and Chemical Biology
    2. Structural Biology and Molecular Biophysics

    Kinetic regulation of kinesin’s two motor domains coordinates its stepping along microtubules

    Yamato Niitani, Kohei Matsuzaki ... Michio Tomishige
    Kinetic measurements of kinesin-1's front and rear heads reveal how different neck linker orientation regulate their activity, enabling the motor protein to move in a coordinated manner along microtubules.
    1. Structural Biology and Molecular Biophysics

    Distinct activation mechanisms of CXCR4 and ACKR3 revealed by single-molecule analysis of their conformational landscapes

    Christopher T Schafer, Raymond F Pauszek III ... David P Millar
    The conformational dynamics and landscapes of the related chemokine receptors CXCR4 and ACKR3, revealed by single-molecule analysis, provide mechanistic insights into differences in constitutive activity, ligand promiscuity, and effector coupling.