8,493 results found
    1. Neuroscience

    An open-source device for measuring food intake and operant behavior in rodent home-cages

    Bridget A Matikainen-Ankney, Thomas Earnest ... Alexxai V Kravitz
    An open-source behavioral platform allows for operant, feeding, and circadian experiments in rodent home-cages.
    1. Neuroscience

    CaImAn an open source tool for scalable calcium imaging data analysis

    Andrea Giovannucci, Johannes Friedrich ... Eftychios A Pnevmatikakis
    CaImAn is an open-software package that equips the neuroscience community with a set of turnkey, fast and scalable solutions to pre-processing problems arising in single cell calcium imaging data analysis.
    1. Neuroscience

    An open-source platform for head-fixed operant and consummatory behavior

    Adam Gordon-Fennell, Joumana M Barbakh ... Garret D Stuber
    A customizable open-source hardware and software platform for conducting diverse behavioral experiments in head-fixed mice.
    1. Neuroscience

    Open-source, Python-based, hardware and software for controlling behavioural neuroscience experiments

    Thomas Akam, Andy Lustig ... Mark E Walton
    pyControl is an open-source tool that makes it easy to specify complex behavioural tasks, run them at scale on low-cost hardware, and communicate task logic to other researchers.
    1. Developmental Biology

    ZAF, the first open source fully automated feeder for aquatic facilities

    Merlin Lange, AhmetCan Solak ... Loïc Alain Royer
    ZAF (Zebrafish Automated Feeder) is the first fully automated, easy to build, and open source fish feeder designed for small and medium sized labs of which there are an estimated 3250 in 100 countries working with Zebrafish alone today.
    1. Neuroscience

    An open-source, high-performance tool for automated sleep staging

    Raphael Vallat, Matthew P Walker
    A robust automatic sleep-staging algorithm offers a high level of accuracy matching that of typical human interscorer agreement.
    1. Computational and Systems Biology

    Cutting Edge: Anatomy of BioJS, an open source community for the life sciences

    Guy Yachdav, Tatyana Goldberg ... Manuel Corpas
    Community nurturing is the single most important factor in determining the sustainability of an open source project such as BioJS.
    1. Neuroscience

    Minian, an open-source miniscope analysis pipeline

    Zhe Dong, William Mau ... Denise J Cai
    Minian is an open-source analysis pipeline for calcium imaging data that enhances usability with low memory demands and transparency with user-friendly interactive visualizations.
    1. Computational and Systems Biology
    2. Immunology and Inflammation

    An open-source computational and data resource to analyze digital maps of immunopeptidomes

    Etienne Caron, Lucia Espona ... Ruedi Aebersold
    A community-based international effort generates standardized HLA allele-specific peptide assay libraries and enables the analysis of the human immunopeptidome by SWATH mass spectrometry.
    1. Cell Biology

    An open-source, high-resolution, automated fluorescence microscope

    Ando Christian Zehrer, Ana Martin-Villalba ... Helge Ewers
    High-quality fluorescence live-cell and single molecule imaging via computer-controlled, user-assembled microscope that fits in incubator, can in large parts be 3D printed and employs open source software and electronics.

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