Browse our latest Computational and Systems Biology articles

Page 24 of 116
    1. Computational and Systems Biology

    A new pipeline SPICE identifies novel JUN-IKZF1 composite elements

    Peng Li, Sree H. Pulugulla ... Warren J. Leonard
    Not revised
    Reviewed Preprint v1
    1. Computational and Systems Biology
    2. Neuroscience

    High-resolution volumetric imaging constrains compartmental models to explore synaptic integration and temporal processing by cochlear nucleus globular bushy cells

    George A Spirou, Matthew Kersting ... Paul B Manis
    Volume electron-microscopic reconstructions of auditory brainstem neurons and their afferent synapses were used to develop a pipeline creating biophysically defined computational models with heterogenous inputs, revealing roles for subthreshold synapses to enhance temporal processing unique features of their dendrites.
    1. Neuroscience
    2. Computational and Systems Biology

    A stochastic model of hippocampal synaptic plasticity with geometrical readout of enzyme dynamics

    Yuri Elias Rodrigues, Cezar M Tigaret ... Romain Veltz
    A computational model of glutamatergic synapse uncovers a new plasticity rule which takes into account the various experimental conditions.
    1. Computational and Systems Biology

    Barcode-free multiplex plasmid sequencing using Bayesian analysis and nanopore sequencing

    Masaaki Uematsu, Jeremy M. Baskin
    Not revised
    Reviewed Preprint v1
    1. Computational and Systems Biology
    2. Neuroscience

    Uncovering circuit mechanisms of current sinks and sources with biophysical simulations of primary visual cortex

    Atle E Rimehaug, Alexander J Stasik ... Anton Arkhipov
    A biophysically detailed model of mouse primary visual cortex reproduces, in a quantitative manner, experimentally recorded spikes and local field potentials, and suggests mechanisms that form current sinks and sources in vivo.
    1. Computational and Systems Biology

    The functional form of value normalization in human reinforcement learning

    Sophie Bavard, Stefano Palminteri
    Challenging a popular theory in neuroeconomics, a computational cognitive study provides evidence against divisive normalization, a supposedly canonical neural computation, in favor of an alternative account, range normalization, in the context of value learning.
    1. Cell Biology
    2. Computational and Systems Biology

    Determining growth rates from bright-field images of budding cells through identifying overlaps

    Julian MJ Pietsch, Alán F Muñoz ... Peter S Swain
    The BABY algorithm by estimating growth rates of individual cells from time-lapse microscopy images will help characterise the diversity in populations of budding cells, particularly differences in fitness.
    1. Computational and Systems Biology
    2. Immunology and Inflammation

    Short-range interactions between fibrocytes and CD8+ T cells in COPD bronchial inflammatory response

    Edmée Eyraud, Elise Maurat ... Isabelle Dupin
    Intercellular interactions between fibrocytes and CD8+ T lymphocytes promote inflammation through a pathophysiological positive feedback loop in bronchi of patients with chronic obstructive pulmonary disease (COPD).
    1. Computational and Systems Biology

    Leveraging genetic diversity to identify small molecules that reverse mouse skeletal muscle insulin resistance

    Stewart WC Masson, Søren Madsen ... David E James
    A pharmacological approach for the validation of systems genetics data in the context of insulin resistance.
    1. Computational and Systems Biology
    2. Developmental Biology

    How enhancers regulate wavelike gene expression patterns

    Christine Mau, Heike Rudolf ... Ezzat El-Sherif
    An experimental and computational system has been developed to investigate how wavelike gene expression patterns are generated during embryonic development.