Browse our latest Computational and Systems Biology articles

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    1. Computational and Systems Biology
    2. Neuroscience

    Adult-born granule cells improve stimulus encoding and discrimination in the dentate gyrus

    Diego M Arribas, Antonia Marin-Burgin, Luis G Morelli
    Heterogeneity in the population of granule cells in the dentate gyrus, which includes immature and mature neurons with distinct intrinsic properties, contributes to the population's enhanced encoding capabilities and ability to discriminate correlated stimuli.
    1. Computational and Systems Biology
    2. Structural Biology and Molecular Biophysics

    Dynamic allosteric networks drive adenosine A1 receptor activation and G-protein coupling

    Miguel A Maria-Solano, Sun Choi
    Deciphering the dynamics of the allosteric communication and the formation of transient pockets along the activation pathway of G-protein-coupled receptors provides useful information for the design of allosteric modulators.
    1. Computational and Systems Biology
    2. Neuroscience

    High-resolution volumetric imaging constrains compartmental models to explore synaptic integration and temporal processing by cochlear nucleus globular bushy cells

    George A Spirou, Matthew Kersting ... Paul B Manis
    Volume electron-microscopic reconstructions of auditory brainstem neurons and their afferent synapses were used to develop a pipeline creating biophysically defined computational models with heterogenous inputs, revealing roles for subthreshold synapses to enhance temporal processing unique features of their dendrites.
    1. Neuroscience
    2. Computational and Systems Biology

    A stochastic model of hippocampal synaptic plasticity with geometrical readout of enzyme dynamics

    Yuri Elias Rodrigues, Cezar M Tigaret ... Romain Veltz
    A computational model of glutamatergic synapse uncovers a new plasticity rule which takes into account the various experimental conditions.
    1. Computational and Systems Biology
    2. Neuroscience

    Uncovering circuit mechanisms of current sinks and sources with biophysical simulations of primary visual cortex

    Atle E Rimehaug, Alexander J Stasik ... Anton Arkhipov
    A biophysically detailed model of mouse primary visual cortex reproduces, in a quantitative manner, experimentally recorded spikes and local field potentials, and suggests mechanisms that form current sinks and sources in vivo.
    1. Computational and Systems Biology

    The functional form of value normalization in human reinforcement learning

    Sophie Bavard, Stefano Palminteri
    Challenging a popular theory in neuroeconomics, a computational cognitive study provides evidence against divisive normalization, a supposedly canonical neural computation, in favor of an alternative account, range normalization, in the context of value learning.
    1. Cell Biology
    2. Computational and Systems Biology

    Determining growth rates from bright-field images of budding cells through identifying overlaps

    Julian MJ Pietsch, Alán F Muñoz ... Peter S Swain
    The BABY algorithm by estimating growth rates of individual cells from time-lapse microscopy images will help characterise the diversity in populations of budding cells, particularly differences in fitness.
    1. Computational and Systems Biology
    2. Immunology and Inflammation

    Short-range interactions between fibrocytes and CD8+ T cells in COPD bronchial inflammatory response

    Edmée Eyraud, Elise Maurat ... Isabelle Dupin
    Intercellular interactions between fibrocytes and CD8+ T lymphocytes promote inflammation through a pathophysiological positive feedback loop in bronchi of patients with chronic obstructive pulmonary disease (COPD).
    1. Computational and Systems Biology

    Leveraging genetic diversity to identify small molecules that reverse mouse skeletal muscle insulin resistance

    Stewart WC Masson, Søren Madsen ... David E James
    A pharmacological approach for the validation of systems genetics data in the context of insulin resistance.