Browse our latest Computational and Systems Biology articles

Page 5 of 131
    1. Neuroscience
    2. Computational and Systems Biology

    Structured stabilization in recurrent neural circuits through inhibitory synaptic plasticity

    Dylan Festa, Claudia Cusseddu, Julijana Gjorgjieva
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Convincing
    1. Computational and Systems Biology

    Benchmarking biochemical networks generated by large language models

    Jeevan Tewari, Benjamin W Dahl ... Jeffrey J Saucerman
    Current general-purpose large language models generate signaling and metabolic networks with only modest accuracy relative to manually curated network models.
    Version of Record
    Short Report
    • Important
    • Convincing
    1. Computational and Systems Biology
    2. Neuroscience

    Dichotomy between extracellular signatures of active dendritic chemical synapses and gap junctions

    Richa Sirmaur, Rishikesh Narayanan
    Fundamental distinctions in the extracellular signatures of active-dendritic chemical and electrical synapses necessitate a revision of conventional interpretations of local field potentials centered on chemical synapses.
    1. Computational and Systems Biology
    2. Neuroscience

    Active dendrites enable robust spiking computations despite timing jitter

    Thomas SJ Burger, Michael E Rule, Timothy O'Leary
    The brain computes rapidly and reliably using brief electrical impulses and likely exploits internal memory in nerve cells to achieve this more efficiently than existing computing hardware and neural networks.
    1. Computational and Systems Biology

    Large-scale synthetic data enable digital twins of human excitable cells

    Pei-Chi Yang, Mao-Tsuen Jeng ... Colleen E Clancy
    Large-scale synthetic datasets enable construction of digital twins of individual human excitable cells from a single voltage-clamp recording.
    1. Computational and Systems Biology

    Functional muscle networks as biomarkers of post-stroke motor impairment and therapeutic responsiveness

    David O'Reilly, Giorgia Pregnolato ... Giacomo Severini
    The proposed muscle network analysis framework identifies a redundancy-to-synergy shift as a marker of stroke recovery, yielding new biomarkers that could objectively quantify functional impairment and rehabilitation efficacy.
    1. Computational and Systems Biology
    2. Developmental Biology

    Quantitative computerized analysis demonstrates strongly compartmentalized tissue deformation patterns underlying mammalian heart tube formation

    Morena Raiola, Miquel Sendra Sendra ... Miguel Torres
    A computational pipeline leverages mammalian heart development videos to extract tissue deformation patterns and generate a virtual fate map tool that provides new insights into cardiac morphogenesis.
    1. Microbiology and Infectious Disease
    2. Computational and Systems Biology

    Petabase-scale Papillomavirus Discovery

    Jessica YQ Shen, Anton Korobeynikov ... Artem Babaian
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Convincing
    1. Medicine
    2. Computational and Systems Biology

    Calibration and validation strategy for electromechanical cardiac digital twins

    Zhinuo Jenny Wang, Maxx Holmes ... Blanca Rodriguez
    Revised
    Reviewed Preprint v2
    Updated
    • Important
    • Convincing