Browse our latest Computational and Systems Biology articles

Page 28 of 121
    1. Computational and Systems Biology
    2. Genetics and Genomics

    Systems level identification of a matrisome-associated macrophage polarisation state in multi-organ fibrosis

    John F Ouyang, Kunal Mishra ... Jacques Behmoaras
    A meta-analysis of single-cell data reveals an advanced and conserved polarisation state of SPP1+ macrophages in multiple human fibrotic tissues.
    1. Cell Biology
    2. Computational and Systems Biology

    Continuous sensing of nutrients and growth factors by the mTORC1-TFEB axis

    Breanne Sparta, Nont Kosaisawe ... John G Albeck
    Single-cell data on cell signaling responses to nutrient variation enable quantitative models of cellular control over protein synthesis, formalizing the concept of mTOR as a homeostatic controller of cellular metabolism.
    1. Computational and Systems Biology
    2. Genetics and Genomics

    Broad functional profiling of fission yeast proteins using phenomics and machine learning

    María Rodríguez-López, Nicola Bordin ... Jürg Bähler
    Large-scale screens and computational approaches reveal phenotypes for 3492 genes and gene-ontology predictions for 783 genes, including hitherto unstudied genes, which provides a potent platform to further dissect protein function.
    1. Computational and Systems Biology
    2. Neuroscience

    Task-dependent optimal representations for cerebellar learning

    Marjorie Xie, Samuel P Muscinelli ... Ashok Litwin-Kumar
    Classical theoretical approaches to studying the cerebellar cortex are generalized to a broader set of learning tasks, revealing that the optimal value for the sparsity of granule cell activity is task-dependent.
    1. Computational and Systems Biology
    2. Neuroscience

    Dissecting the chain of information processing and its interplay with neurochemicals and fluid intelligence across development

    George Zacharopoulos, Francesco Sella ... Roi Cohen Kadosh
    A novel integrative biological and psychological mechanistic explanation links cognitive processes and neurotransmitters across human development and establishes their involvement in intelligent behavior.
    1. Computational and Systems Biology
    2. Neuroscience

    Dynamic organization of cerebellar climbing fiber response and synchrony in multiple functional components reduces dimensions for reinforcement learning

    Huu Hoang, Shinichiro Tsutsumi ... Keisuke Toyama
    Dimensions for reinforcement learning reduced by dynamic organization of cerebellar climbing fiber response and synchrony in multiple functional components.
    1. Computational and Systems Biology

    A transfer-learning approach to predict antigen immunogenicity and T-cell receptor specificity

    Barbara Bravi, Andrea Di Gioacchino ... Rémi Monasson
    An interpretable machine learning approach can recapitulate the molecular features associated to immune protein-protein binding and leverage them for the prediction of immune response specificity.
    1. Computational and Systems Biology
    2. Ecology

    Gut Health: The value of connections

    Vanessa Rossetto Marcelino
    High proportions of gut bacteria that produce their own food can be an indicator for poor gut health.
    Version of Record
    Insight
    1. Computational and Systems Biology

    A hierarchical model for external electrical control of an insect, accounting for inter-individual variation of muscle force properties

    Dai Owaki, Volker Dürr, Josef Schmitz
    A near-linear relationship between electrical stimulus duration and resultant joint torque in stick insects has been unveiled, enhancing control strategies in biohybrid robotics.