Browse our latest Computational and Systems Biology articles

Page 57 of 125
    1. Computational and Systems Biology
    2. Medicine

    Topological network analysis of patient similarity for precision management of acute blood pressure in spinal cord injury

    Abel Torres-Espín, Jenny Haefeli ... The TRACK-SCI Investigators
    The application of topological network analysis on multicenter high-frequency intra-operative physiology data discovers a precise range of blood pressure during surgery predicting poor recovery in spinal cord injury patients.
    1. Computational and Systems Biology
    2. Structural Biology and Molecular Biophysics

    Markov state models of proton- and pore-dependent activation in a pentameric ligand-gated ion channel

    Cathrine Bergh, Stephanie A Heusser ... Erik Lindahl
    Computational models of gating processes in an ion channel show how stability shifts upon ligand-binding and mutations are reproduced, which highlights mechanistic details and proposes a new role for symmetry in gating.
    1. Computational and Systems Biology
    2. Immunology and Inflammation

    TCR meta-clonotypes for biomarker discovery with tcrdist3 enabled identification of public, HLA-restricted clusters of SARS-CoV-2 TCRs

    Koshlan Mayer-Blackwell, Stefan Schattgen ... Andrew Fiore-Gartland
    Distance-based TCR analysis enables grouping of biochemically similar clonotypes into meta-clonotypes that have increased publicity, and therefore statistical power, for population-level detection of antigen-specific T cells in infection and vaccination.
    1. Computational and Systems Biology
    2. Neuroscience

    Daily electrical activity in the master circadian clock of a diurnal mammal

    Beatriz Bano-Otalora, Matthew J Moye ... Mino DC Belle
    Circadian control of neuronal excitability in the master circadian clock of a diurnal mammal as revealed by whole-cell recording and mathematical modeling.
    1. Computational and Systems Biology
    2. Neuroscience

    Circadian Rhythm: How neurons adjust to diurnality

    Gabriele Andreatta, Charles N Allen
    Being active during the day requires a slow-closing ion channel that dampens the activity of neurons in a specific area of the brain.
    Version of Record
    Insight
    1. Computational and Systems Biology
    2. Genetics and Genomics

    A computational screen for alternative genetic codes in over 250,000 genomes

    Yekaterina Shulgina, Sean R Eddy
    Five previously unknown alternative genetic codes are found in a screen of bacterial and archaeal genomes by a new computational method called Codetta, lending new insights into the process of their evolution.
    1. Chromosomes and Gene Expression
    2. Computational and Systems Biology

    Pathway dynamics can delineate the sources of transcriptional noise in gene expression

    Lucy Ham, Marcel Jackson, Michael PH Stumpf
    There are fundamental limits to what can be learned about the origins of transcriptional noise from gene expression data alone, which can be overcome by simultaneously quantifying the abundances of linked molecular species.
    1. Computational and Systems Biology
    2. Genetics and Genomics

    A sex-specific evolutionary interaction between ADCY9 and CETP

    Isabel Gamache, Marc-André Legault ... Julie Hussin
    Genomics-based evidence support population- and sex-specific selection of an epistatic interaction between genetic variants in ADCY9 and CETP, genes of pharmacogenetic importance in cardiovascular diseases.
    1. Computational and Systems Biology
    2. Neuroscience

    A causal role for the right frontal eye fields in value comparison

    Ian Krajbich, Andres Mitsumasu ... Ernst Fehr
    Inhibition of activity in the right frontal eye fields reduces the amplifying effect of gaze in value-based choice.
    1. Computational and Systems Biology

    Protein allocation and utilization in the versatile chemolithoautotroph Cupriavidus necator

    Michael Jahn, Nick Crang ... Elton Paul Hudson
    Proteomics and metabolic modeling revealed that the 'knallgas' bacterium Cupriavidus necator utilizes only a fraction of its proteome and keeps large enzyme reserves as an adaption to variable environments.