Browse our latest Computational and Systems Biology articles

Page 57 of 128
    1. Cancer Biology
    2. Computational and Systems Biology

    Aspirin’s effect on kinetic parameters of cells contributes to its role in reducing incidence of advanced colorectal adenomas, shown by a multiscale computational study

    Yifan Wang, C Richard Boland ... Natalia L Komarova
    A mathematical model of colorectal cancer initiation shows that a change in cells’ kinetic parameters due to aspirin can account for an observed reduction in advanced adenoma age- incidence in patients treated with aspirin.
    1. Computational and Systems Biology
    2. Neuroscience

    Strategy-dependent effects of working-memory limitations on human perceptual decision-making

    Kyra Schapiro, Krešimir Josić ... Joshua I Gold
    Computed decisions degrade in working memory in a manner that depends on one of two strategies used to store relevant information as revealed by mathematical analysis of behavioral response patterns.
    1. Computational and Systems Biology

    Common coupling map advances GPCR-G protein selectivity

    Alexander S Hauser, Charlotte Avet ... David E Gloriam
    The GPCR-G protein coupling map and selectivity insights will catalyze advances in receptor research, cellular signaling, and drug discovery exploiting G protein signaling bias to design safer drugs.
    1. Computational and Systems Biology
    2. Genetics and Genomics

    A conditional gene-based association framework integrating isoform-level eQTL data reveals new susceptibility genes for schizophrenia

    Xiangyi Li, Lin Jiang ... Miaoxin Li
    An improved conditional gene-based association analysis framework guided by multiple variant-gene mapping strategies was built and evaluated based on its performance in predicting the potential susceptibility isoforms, genes, and tissues of schizophrenia.
    1. Computational and Systems Biology
    2. Neuroscience

    Mapping circuit dynamics during function and dysfunction

    Srinivas Gorur-Shandilya, Elizabeth M Cronin ... Eve Marder
    Mapping spike patterns from a small identified circuit reveals the diversity and complexity of circuit dynamics across animals and in response to perturbations.
    1. Computational and Systems Biology

    Modular, robust, and extendible multicellular circuit design in yeast

    Alberto Carignano, Dai Hua Chen ... Eric Klavins
    Multicellular systems exhibiting a wide variety of behaviors, including logic gates, band-pass filtering, and bistability, are constructed from a fixed vocabulary of input-output strains through model-guided design demonstrating predictable composability, tunability, and extendability.
    1. Computational and Systems Biology

    Automated, high-dimensional evaluation of physiological aging and resilience in outbred mice

    Zhenghao Chen, Anil Raj ... Adam Freund
    A non-invasive animal monitoring system paired with a custom analysis pipeline allows organism-level aging to be studied with improved throughput, resolution, and physiological scope while reducing the activation energy that comes with highly specialized challenge-based procedures.
    1. Chromosomes and Gene Expression
    2. Computational and Systems Biology

    Robust and annotation-free analysis of alternative splicing across diverse cell types in mice

    Gonzalo Benegas, Jonathan Fischer, Yun S Song
    A robust computational pipeline for alternative splicing analysis is developed and applied to large-scale cell atlases, overcoming technical challenges and making results available for the scientific community to explore via public interactive browsers.
    1. Computational and Systems Biology
    2. Neuroscience

    An incentive circuit for memory dynamics in the mushroom body of Drosophila melanogaster

    Evripidis Gkanias, Li Yan McCurdy ... Barbara Webb
    Modelling differential roles for identified dopaminergic and output neurons of the fruit fly mushroom bodies, combined with a novel dopaminergic plasticity rule, explains neural and behavioural phenomena in olfactory learning tasks.
    1. Computational and Systems Biology
    2. Medicine

    Meta-Research: Author-level data confirm the widening gender gap in publishing rates during COVID-19

    Emil Bargmann Madsen, Mathias Wullum Nielsen ... Jens Peter Andersen
    The gender gap in publication productivity has increased during the COVID-19 pandemic, with potential implications for the careers of women working in research.