Browse our latest Computational and Systems Biology articles

Page 42 of 125
    1. Computational and Systems Biology
    2. Neuroscience

    Emergent color categorization in a neural network trained for object recognition

    Jelmer P de Vries, Arash Akbarinia ... Karl R Gegenfurtner
    Human-like color categories emerge in a Deep Neural Network trained only on object recognition.
    1. Computational and Systems Biology
    2. Structural Biology and Molecular Biophysics

    Deep learning-driven insights into super protein complexes for outer membrane protein biogenesis in bacteria

    Mu Gao, Davi Nakajima An, Jeffrey Skolnick
    An example of a deep learning-based strategy to discover novel protein-protein interactions and predict their complex structures at high accuracy.
    1. Computational and Systems Biology
    2. Genetics and Genomics

    Osteoporosis: Finding the genes for fragile bones

    Erika Kague
    Combining transcriptomic data with the analysis of large genome-wide association studies helps identify genes that are likely important for regulating bone mineral density.
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    1. Computational and Systems Biology
    2. Neuroscience

    Normative decision rules in changing environments

    Nicholas W Barendregt, Joshua I Gold ... Zachary P Kilpatrick
    In environments that fluctuate over the course of deliberation, optimal decision strategies display novel dynamics that can explain human response behaviors better than commonly used alternatives.
    1. Cancer Biology
    2. Computational and Systems Biology

    Defining cellular population dynamics at single-cell resolution during prostate cancer progression

    Alexandre A Germanos, Sonali Arora ... Andrew C Hsieh
    A large-scale single-cell RNA sequencing experiment explores single-cell dynamics in epithelial and immune populations within murine prostates upon cancer initiation and progression and validates key findings across orthogonal models and patient specimens.
    1. Computational and Systems Biology
    2. Genetics and Genomics

    Evaluation of in silico predictors on short nucleotide variants in HBA1, HBA2, and HBB associated with haemoglobinopathies

    Stella Tamana, Maria Xenophontos ... Petros Kountouris
    The calibration of decision thresholds will provide evidence for the optimal use of in silico predictors for the standardised classification of globin gene variants under the American College of Medical Genetics and Genomics/Association for Molecular Pathology framework.
    1. Computational and Systems Biology
    2. Physics of Living Systems

    Measurements of damage and repair of binary health attributes in aging mice and humans reveal that robustness and resilience decrease with age, operate over broad timescales, and are affected differently by interventions

    Spencer Farrell, Alice E Kane ... Andrew D Rutenberg
    Damage and repair for both aging mice and humans declined with age, exhibited very long timescales that varied across health attributes, and were differently affected by interventions.
    1. Computational and Systems Biology

    A unified framework for measuring selection on cellular lineages and traits

    Shunpei Yamauchi, Takashi Nozoe ... Yuichi Wakamoto
    A unified framework for cell lineage statistics enables quantification of fitness landscapes and selection strength for any cellular lineage traits in a model-independent manner, and reveals the contributions of growth heterogeneity to population growth in diverse experimental model systems.
    1. Computational and Systems Biology
    2. Physics of Living Systems

    Macroscopic control of cell electrophysiology through ion channel expression

    Mario García-Navarrete, Merisa Avdovic ... Krzysztof Wabnik
    A combination of mathematical modeling and live-cell imaging reveals a strategy for the rational control over cell electrophysiology though modulation of ion channel expression.
    1. Computational and Systems Biology
    2. Developmental Biology

    Deep proteome profiling reveals signatures of age and sex differences in paw skin and sciatic nerve of naïve mice

    Feng Xian, Julia Regina Sondermann ... Manuela Schmidt
    Proteomics uncovers thus far unknown age and sex differences in sciatic nerve and skin of naïve mice, highlighting the importance of adequate age matching and parallel investigation of male and female mice in biomedical studies.