Browse our latest Genetics and Genomics articles

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    1. Cell Biology
    2. Genetics and Genomics

    ReporterSeq reveals genome-wide dynamic modulators of the heat shock response across diverse stressors

    Brian D Alford, Eduardo Tassoni-Tsuchida ... Onn Brandman
    A pooled genetic screening method measures the effect of knocking down every gene on a transcriptional stress response to proteotoxic stress (the heat shock response) using only nucleic acid sequencing, without cell enrichment or single-cell isolation.
    1. Chromosomes and Gene Expression
    2. Genetics and Genomics

    Functional dynamic genetic effects on gene regulation are specific to particular cell types and environmental conditions

    Anthony S Findley, Alan Monziani ... Francesca Luca
    Investigation of dynamic gene regulation across cell types and environments reveals new GxE regulatory loci that are important for disease.
    1. Genetics and Genomics
    2. Immunology and Inflammation

    Genetic variant in 3’ untranslated region of the mouse pycard gene regulates inflammasome activity

    Brian Ritchey, Qimin Hai ... Jonathan D Smith
    A new mode of inflammasome regulation was discovered through a mouse strain intercross that identified the Pycard locus was associated with IL-1β release, and gene editing showed this was due to an SNP in the Pycard mRNA regulating its turnover.
    1. Genetics and Genomics

    Loss of heterozygosity results in rapid but variable genome homogenization across yeast genetic backgrounds

    Abhishek Dutta, Fabien Dutreux, Joseph Schacherer
    Loss of heterozygosity (LOH) mediated diversification of the diploid S. cerevisiae hybrid genomes during asexual propagation are vast and exceptionally varied depending on the genetic background.
    1. Genetics and Genomics
    2. Microbiology and Infectious Disease

    Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy

    Daniel R Knight, Korakrit Imwattana ... Thomas V Riley
    The Clostridioides difficile taxonomy is characterised by major taxonomic incoherence and clear species boundaries.
    1. Genetics and Genomics

    Start codon disruption with CRISPR/Cas9 prevents murine Fuchs’ endothelial corneal dystrophy

    Hironori Uehara, Xiaohui Zhang ... Balamurali K Ambati
    Adenoviral CRISPR/Cas9 gene knockdown of mutant Col8a2 achieves structural and functional rescue of murine Fuchs’ endothelial corneal dystrophy, the first demonstration of post-mitotic CRISPR-based knockdown for phenotypic restoration.
    1. Epidemiology and Global Health
    2. Genetics and Genomics

    Regional sequencing collaboration reveals persistence of the T12 Vibrio cholerae O1 lineage in West Africa

    Eme Ekeng, Serges Tchatchouang ... Shirlee Wohl
    The T12 Vibrio cholerae lineage has been continuously circulating in West Africa since at least 2012, highlighting the importance of regional disease control efforts.
    1. Genetics and Genomics
    2. Medicine

    Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning

    Yi Liu, Nicolas Basty ... Madeleine Cule
    Systematic quantification of abdominal organ health parameters using deep learning generates new insights into the genetic architecture of cardiometabolic health traits.
    1. Computational and Systems Biology
    2. Genetics and Genomics

    Detecting adaptive introgression in human evolution using convolutional neural networks

    Graham Gower, Pablo Iáñez Picazo ... Fernando Racimo
    Convolutional neural networks are an effective tool for detecting archaic adaptive introgression from genomic data.
    1. Developmental Biology
    2. Genetics and Genomics

    Novel cell types and developmental lineages revealed by single-cell RNA-seq analysis of the mouse crista ampullaris

    Brent A Wilkerson, Heather L Zebroski ... Olivia Bermingham-McDonogh
    The elucidation of the cellular composition of the crista and the genes expressed in each cell type is a critical step toward understanding inner ear development, function, and vestibulopathies.