Browse our latest Computational and Systems Biology articles

Page 107 of 130
    1. Computational and Systems Biology
    2. Neuroscience

    Exploratory search during directed navigation in C. elegans and Drosophila larva

    Mason Klein, Sergei V Krivov ... Martin Karplus
    Crawling Drosophila larvae and C. elegans exhibit diffusive behavior alongside directed motion, and the dynamics of this navigation can be analyzed with techniques developed in understanding protein folding, using a Markov state model.
    1. Computational and Systems Biology
    2. Developmental Biology

    Dynamics of BMP signaling and distribution during zebrafish dorsal-ventral patterning

    Autumn P Pomreinke, Gary H Soh ... Patrick Müller
    Patterning of the dorsal-ventral axis in zebrafish is mediated by a graded source-sink mechanism in which diffusing BMP, produced from a ventrally biased source, is inhibited by dorsally-produced chordin.
    1. Biochemistry and Chemical Biology
    2. Computational and Systems Biology

    Computational design of environmental sensors for the potent opioid fentanyl

    Matthew J Bick, Per J Greisen ... David Baker
    State-of-the-art computational methods have facilitated the construction of plant-based sentinels for detecting toxic molecules in the environment.
    1. Computational and Systems Biology

    Systematic integration of biomedical knowledge prioritizes drugs for repurposing

    Daniel Scott Himmelstein, Antoine Lizee ... Sergio E Baranzini
    Project Rephetio combines data integration and systematic analysis to enable drug repurposing predictions on an unprecedented scale.
    1. Computational and Systems Biology
    2. Neuroscience

    Regulation of sleep homeostasis by sexual arousal

    Esteban J Beckwith, Quentin Geissmann ... Giorgio F Gilestro
    Sexual arousal, exposure to aphrodisiac pheromones, or mere activation of peripheral pheromone-sensing neurons can modulate sleep homeostasis and are able to counteract the effects of sleep deprivation in Drosophila.
    1. Computational and Systems Biology
    2. Neuroscience

    Sleep: To rebound or not to rebound

    Bethany A Stahl, Alex C Keene
    Sexual arousal in flies counteracts the effects of sleep deprivation.
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    1. Structural Biology and Molecular Biophysics
    2. Computational and Systems Biology

    Lipids and ions traverse the membrane by the same physical pathway in the nhTMEM16 scramblase

    Tao Jiang, Kuai Yu ... Emad Tajkhorshid
    A concerted approach employing equilibrium and biased molecular simulations, electrophysiology, mutagenesis, and functional assays reveals, in atomic details, the mechanism and pathway for transport of phospholipids and ions by a lipid scramblase.
    1. Computational and Systems Biology
    2. Plant Biology

    Rapid transporter regulation prevents substrate flow traffic jams in boron transport

    Naoyuki Sotta, Susan Duncan ... Verônica A Grieneisen
    To avoid internal traffic jams of nutrients that they absorb, plants need to swiftly regulate the transporters that take up those nutrients.
    1. Computational and Systems Biology
    2. Developmental Biology

    A multi-scale model for hair follicles reveals heterogeneous domains driving rapid spatiotemporal hair growth patterning

    Qixuan Wang, Ji Won Oh ... Maksim V Plikus
    Regional differences in activator and inhibitor signals alter hair cycle pace across mouse skin and produce unique fur renewal 'landscapes', with fastest renewal on the ventrum and slowest renewal on the ear pinnae.
    1. Computational and Systems Biology
    2. Genetics and Genomics

    MicroCT-based phenomics in the zebrafish skeleton reveals virtues of deep phenotyping in a distributed organ system

    Matthew Hur, Charlotte A Gistelinck ... Ronald Y Kwon
    Deep skeletal phenotyping in adult zebrafish reveals enhanced sensitivity of phenomic patterns in discriminating mutant populations.