Computational and Systems Biology

Latest articles

1. 1. Computational and Systems Biology

   AI-driven Automated Discovery Tools Reveal Diverse Behavioral Competencies of Biological Networks

   Mayalen Etcheverry, Clément Moulin-Frier ... Michael Levin
2. 1. Neuroscience
   2. Computational and Systems Biology

   Visual information is broadcast among cortical areas in discrete channels

   Yiyi Yu, Jeffery N. Stirman ... Spencer LaVere Smith
3. 1. Neuroscience
   2. Computational and Systems Biology

   Firing rate adaptation affords place cell theta sweeps, phase precession and procession

   Tianhao Chu, Zilong Ji ... Si Wu
4. 1. Computational and Systems Biology

   Statistical and computational methods for integrating microbiome, host genomics, and metabolomics data

   Rebecca A Deek, Siyuan Ma ... Hongzhe Li

   Advanced statistical and computational methods are reviewed and compared for integrating microbiome, host genomics, and metabolomics data, together with future research directions.
5. 1. Computational and Systems Biology

   Phantasus, a web application for visual and interactive gene expression analysis

   Maksim Kleverov, Daria Zenkova ... Alexey A Sergushichev

   Phantasus democratizes gene expression analysis, offering intuitive and interactive tools that streamline the exploration and analysis of user-provided data and over 96,000 public datasets.
6. 1. Cell Biology
   2. Computational and Systems Biology

   Agent-based model demonstrates the impact of nonlinear, complex interactions between cytokines on muscle regeneration

   Megan Haase, Tien Comlekoglu ... Silvia S Blemker

   A computational model of skeletal muscle regeneration reveals complex interplay of cytokines, angiogenesis, and cell behaviors, predicting that synergistic cytokine perturbations enhance skeletal muscle regeneration beyond individual cytokine interventions.
7. 1. Epidemiology and Global Health
   2. Computational and Systems Biology

   Reliance on self-reports and estimated food composition data in nutrition research introduces significant bias that can only be addressed with biomarkers

   Javier I. Ottaviani, Virag Sagi-Kiss ... Gunter G. C. Kuhnle
8. 1. Computational and Systems Biology

   H3-OPT: Accurate prediction of CDR-H3 loop structures of antibodies with deep learning

   Hedi Chen, Xiaoyu Fan ... Boxue Tian
9. 1. Computational and Systems Biology

   Mitochondrial respiration atlas reveals differential changes in mitochondrial function across sex and age

   Dylan C. Sarver, Muzna Saqib ... G. William Wong
10. 1. Computational and Systems Biology
    2. Neuroscience

    Theoretical principles explain the structure of the insect head direction circuit

    Pau Vilimelis Aceituno, Dominic Dall'Osto, Ioannis Pisokas

    Three theoretical principles explain the neural activity observed in the head direction circuit of insects, the connectivity pattern underlying the circuit, and how the ubiquitous eight-column circuit structure emerged from evolutionary processes.