6,773 results found
    1. Cell Biology
    2. Neuroscience

    A scalable and modular automated pipeline for stitching of large electron microscopy datasets

    Gayathri Mahalingam, Russel Torres ... Nuno Macarico da Costa
    A novel image processing infrastructure that is capable of processing petascale datasets and can operate on both electron and light microscopy data.
    1. Structural Biology and Molecular Biophysics

    cisTEM, user-friendly software for single-particle image processing

    Timothy Grant, Alexis Rohou, Nikolaus Grigorieff
    cisTEM enables fast processing of single-particle cryo-EM data on CPU-based workstations and is easily accessible to new users.
    1. Structural Biology and Molecular Biophysics

    Low cost, high performance processing of single particle cryo-electron microscopy data in the cloud

    Michael A Cianfrocco, Andres E Leschziner
    A freely available software environment on Amazon's cloud computing network makes processing of cryo-EM data accessible and affordable.
    1. Developmental Biology
    2. Physics of Living Systems

    Rapid changes in tissue mechanics regulate cell behaviour in the developing embryonic brain

    Amelia J Thompson, Eva K Pillai ... Kristian Franze
    During embryonic development, tissue stiffness, which provides an important signal to motile cells, changes locally within tens of minutes in a well-controlled manner.
    1. Cell Biology
    2. Physics of Living Systems

    A high-throughput platform for single-molecule tracking identifies drug interaction and cellular mechanisms

    David Trombley McSwiggen, Helen Liu ... Hilary P Beck
    Single-molecule tracking at scale, analyzing millions of cells and thousands of compounds per day, demonstrates that measuring protein motion provides mechanistic insights relevant to drug discovery.
    1. Neuroscience

    Learning-related contraction of gray matter in rodent sensorimotor cortex is associated with adaptive myelination

    Tomas Mediavilla, Özgün Özalay ... Daniel J Marcellino
    Learning produces dynamic white matter volumetric changes in the rodent brain observed by voxel-based morphometry on longitudinal structural MRI for which estimated white matter volume reflects adaptive myelination in the cortex.
    1. Neuroscience

    Visual processing of informative multipoint correlations arises primarily in V2

    Yunguo Yu, Anita M Schmid, Jonathan D Victor
    Building on recent findings that central sensory processing allocates resources according to the informativeness of statistical features (Hermundstad et al., 2014), we identify visual area V2 as the site of the relevant computations for local image statistics, thus providing a common underpinning for diverse aspects of its neuronal selectivity.
    1. Computational and Systems Biology
    2. Neuroscience

    A SMARTTR workflow for multi-ensemble atlas mapping and brain-wide network analysis

    Michelle Jin, Simon O Ogundare ... Christine Ann Denny
    A new scalable workflow for analyzing multiple ensemble datasets incorporates SMARTTR, an R package supporting network analysis, visualization, and the import of external datasets.
    1. Neuroscience

    Ultra-Rapid serial visual presentation reveals dynamics of feedforward and feedback processes in the ventral visual pathway

    Yalda Mohsenzadeh, Sheng Qin ... Dimitrios Pantazis
    Reducing visibility with higher image presentation rates increases recurrent processing demands along the visual processing pathway to resolve object recognition.
    1. Cancer Biology
    2. Medicine

    Open-top Bessel beam two-photon light sheet microscopy for three-dimensional pathology

    Won Yeong Park, Jieun Yun ... Ki Hean Kim
    Open-top Bessel beam two-photon light sheet microscopy have the potential for rapid and accurate nondestructive pathology by visualizing 3D histological information.

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