Browse our latest Chromosomes and Gene Expression articles

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    1. Biochemistry and Chemical Biology
    2. Chromosomes and Gene Expression

    MicroRNA 3′-compensatory pairing occurs through two binding modes, with affinity shaped by nucleotide identity and position

    Sean E McGeary, Namita Bisaria ... David P Bartel
    Affinity measurements of microRNA sites representing >1000 different pairing architectures reveal that two binding modes can mediate pairing to the microRNA 3′ region, and that microRNA G and oligo(G/C) residues are most impactful.
    1. Chromosomes and Gene Expression
    2. Genetics and Genomics

    Novel insights from a multiomics dissection of the Hayflick limit

    Michelle Chan, Han Yuan ... David G Hendrickson
    A comprehensive molecular description of the cellular transition into replicative senescence provides evidence of metabolic, epigenetic, and regulatory rewiring that links senescence with wound healing and fibrosis.
    1. Chromosomes and Gene Expression
    2. Genetics and Genomics

    Senescence: A gradual path to mortality

    Na Yang, Payel Sen
    Many of the features associated with senescence appear steadily over time before cells stop dividing.
    Version of Record
    Insight
    1. Chromosomes and Gene Expression

    The TRRAP transcription cofactor represses interferon-stimulated genes in colorectal cancer cells

    Dylane Detilleux, Peggy Raynaud ... Dominique Helmlinger
    A transcriptional coactivator turns into a repressor at specific genes in colorectal cancer cells.
    1. Cancer Biology
    2. Chromosomes and Gene Expression

    Global and context-specific transcriptional consequences of oncogenic Fbw7 mutations

    H Nayanga Thirimanne, Feinan Wu ... Bruce E Clurman
    Genome-wide analyses reveal how tumor-associated mutations of the Fbw7 ubiquitin ligase impact oncogenic transcription factors and gene expression.
    1. Chromosomes and Gene Expression

    Nup98-dependent transcriptional memory is established independently of transcription

    Pau Pascual-Garcia, Shawn C Little, Maya Capelson
    Transcription and epigenetic memory of transcription are two co-occurring independent pathways, governed by different rate constants and unique parameters.
    1. Chromosomes and Gene Expression

    Epigenetic reprogramming by TET enzymes impacts co-transcriptional R-loops

    João C Sabino, Madalena R de Almeida ... Sérgio Fernandes de Almeida
    The deposition of 5-hydroxymethylcytosine epigenetic marks in active genes promotes the annealing of the nascent RNA to the template DNA strand, forming an R-loop.
    1. Biochemistry and Chemical Biology
    2. Chromosomes and Gene Expression

    SWI/SNF senses carbon starvation with a pH-sensitive low-complexity sequence

    J Ignacio Gutierrez, Gregory P Brittingham ... Liam J Holt
    A combination of single-cell analysis, genomics, and simulations shows that a glutamine-rich low-complexity sequence in the SWI/SNF chromatin remodeling complex senses transient intracellular acidification as a signal for cells to switch their global transcriptional program.
    1. Chromosomes and Gene Expression
    2. Developmental Biology

    Allele-specific gene expression can underlie altered transcript abundance in zebrafish mutants

    Richard J White, Eirinn Mackay ... Elisabeth M Busch-Nentwich
    Allele-specific gene expression can affect the results and interpretation of transcriptomic analyses in zebrafish mutants and has broader implications for work in other outbred organisms.
    1. Chromosomes and Gene Expression
    2. Genetics and Genomics

    Identification of novel HPFH-like mutations by CRISPR base editing that elevate the expression of fetal hemoglobin

    Nithin Sam Ravi, Beeke Wienert ... Kumarasamypet M Mohankumar
    Adenine and cytosine base editing of highly homologous HBG proximal promoter identifies novel target sites that result in adult to fetal globin switching without causing 4.9 kb large deletions.