Browse our latest Computational and Systems Biology articles

Page 61 of 128
    1. Computational and Systems Biology
    2. Immunology and Inflammation

    TCR meta-clonotypes for biomarker discovery with tcrdist3 enabled identification of public, HLA-restricted clusters of SARS-CoV-2 TCRs

    Koshlan Mayer-Blackwell, Stefan Schattgen ... Andrew Fiore-Gartland
    Distance-based TCR analysis enables grouping of biochemically similar clonotypes into meta-clonotypes that have increased publicity, and therefore statistical power, for population-level detection of antigen-specific T cells in infection and vaccination.
    1. Computational and Systems Biology
    2. Neuroscience

    Circadian Rhythm: How neurons adjust to diurnality

    Gabriele Andreatta, Charles N Allen
    Being active during the day requires a slow-closing ion channel that dampens the activity of neurons in a specific area of the brain.
    Version of Record
    Insight
    1. Computational and Systems Biology
    2. Genetics and Genomics

    A computational screen for alternative genetic codes in over 250,000 genomes

    Yekaterina Shulgina, Sean R Eddy
    Five previously unknown alternative genetic codes are found in a screen of bacterial and archaeal genomes by a new computational method called Codetta, lending new insights into the process of their evolution.
    1. Chromosomes and Gene Expression
    2. Computational and Systems Biology

    Pathway dynamics can delineate the sources of transcriptional noise in gene expression

    Lucy Ham, Marcel Jackson, Michael PH Stumpf
    There are fundamental limits to what can be learned about the origins of transcriptional noise from gene expression data alone, which can be overcome by simultaneously quantifying the abundances of linked molecular species.
    1. Computational and Systems Biology
    2. Genetics and Genomics

    A sex-specific evolutionary interaction between ADCY9 and CETP

    Isabel Gamache, Marc-André Legault ... Julie Hussin
    Genomics-based evidence support population- and sex-specific selection of an epistatic interaction between genetic variants in ADCY9 and CETP, genes of pharmacogenetic importance in cardiovascular diseases.
    1. Computational and Systems Biology
    2. Neuroscience

    A causal role for the right frontal eye fields in value comparison

    Ian Krajbich, Andres Mitsumasu ... Ernst Fehr
    Inhibition of activity in the right frontal eye fields reduces the amplifying effect of gaze in value-based choice.
    1. Computational and Systems Biology

    Protein allocation and utilization in the versatile chemolithoautotroph Cupriavidus necator

    Michael Jahn, Nick Crang ... Elton Paul Hudson
    Proteomics and metabolic modeling revealed that the 'knallgas' bacterium Cupriavidus necator utilizes only a fraction of its proteome and keeps large enzyme reserves as an adaption to variable environments.
    1. Biochemistry and Chemical Biology
    2. Computational and Systems Biology

    PP2A/B55α substrate recruitment as defined by the retinoblastoma-related protein p107

    Holly Fowle, Ziran Zhao ... Xavier Graña
    Molecular, cellular, and computational analyses reveal key insights into PP2A/B55α's mechanisms of substrate recruitment and active site engagement, and facilitate identification/validation of new substrates, a step towards understanding PP2A/B55α's role in multiple cellular processes.
    1. Computational and Systems Biology
    2. Epidemiology and Global Health

    Emerging dynamics from high-resolution spatial numerical epidemics

    Olivier Thomine, Samuel Alizon ... Mircea Sofonea
    Countrywide agent-based simulations with building-level resolution reveal the importance of demographic repartition and population density on epidemic dynamics of respiratory infections.
    1. Computational and Systems Biology
    2. Genetics and Genomics

    RNA splicing programs define tissue compartments and cell types at single-cell resolution

    Julia Eve Olivieri, Roozbeh Dehghannasiri ... Julia Salzman
    Comprehensive analysis of alternative splicing from human droplet-based scRNA-seq data identifies genes with regulated splicing conserved in mouse and mouse lemur.