May 2025

Cover articles

    1. Developmental Biology

    Organoids and the placenta

    Madeline M Keenen, Liheng Yang ... Carolyn B Coyne
    1. Neuroscience

    Antisense approach shows promise

    Pratibha Thakur, Martin Lackinger ... Joseph A Gogos
    1. Developmental Biology

    Mapping the central complex

    Derek G Epiney, Gonzalo Morales Chaya ... Chris Q Doe
    1. Neuroscience

    Measures of consciousness

    Johannes Jacobus Fahrenfort, Philippa A Johnson ... Simon van Gaal

Highlights controls:

Research articles

    1. Cell Biology
    2. Cancer Biology

    Uev1A counteracts oncogenic Ras stimuli in both polyploid and diploid cells

    Qi Zhang, Yunfeng Wang ... Shaowei Zhao
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Incomplete
    1. Cell Biology

    Effects of Arginine Vasopressin on Islet Cells in Pancreatic Tissue Slices: Glucose-Dependent Modulation of IP3 Receptor-Specific Responses

    Jasmina Kerčmar, Nastja Murko ... Marjan Slak Rupnik
    Not revised
    Reviewed Preprint v1
    • Useful
    • Incomplete
    1. Biochemistry and Chemical Biology

    Deep Learning Reveals Endogenous Sterols as Allosteric Modulators of the GPCR-Gα Interface

    Sanjay Kumar Mohanty, Aayushi Mittal ... Gaurav Ahuja
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Incomplete
    1. Cell Biology

    Sphingolipid imbalance aggravates tau pathology by endomembrane rigidification and rupture

    Jessica Tittelmeier, Carl Alexander Sandhof ... Carmen Nussbaum-Krammer
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Solid
    • Incomplete
    1. Neuroscience

    A geometric shape regularity effect in the human brain

    Mathias Sablé-Meyer, Lucas Benjamin ... Stanislas Dehaene
    Not revised
    Reviewed Preprint v1
    • Important
    • Solid
    1. Developmental Biology
    2. Chromosomes and Gene Expression

    Linage priming and cell type proportioning depends on the interplay between stochastic and deterministic factors

    William M Salvidge, Chris Brimson ... Christopher RL Thompson
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Convincing
    1. Structural Biology and Molecular Biophysics
    2. Microbiology and Infectious Disease

    Structure of an oxygen-induced tubular nanocompartment in Pyrococcus furiosus

    Wenfei Song, Jan Fiala ... Friedrich Förster
    Not revised
    Reviewed Preprint v1
    • Fundamental
    • Compelling
    1. Developmental Biology

    The integration mechanism of the four positional cues—anterior, posterior, dorsal, and ventral—in axolotl limb regeneration

    Sakiya Yamamoto, Saya Furukawa ... Akira Satoh
    Not revised
    Reviewed Preprint v1
    • Fundamental
    • Solid
    1. Biochemistry and Chemical Biology
    2. Genetics and Genomics

    Inhibition of mitochondrial protein import and proteostasis by a pro-apoptotic lipid

    Josep Fita-Torró, José Luis Garrido-Huarte ... Markus Proft
    The pro-apoptotic lipid trans-2-hexadecenal impairs mitochondrial protein import and proteostasis by targeting the TOM complex.
    1. Evolutionary Biology
    2. Microbiology and Infectious Disease

    A suite of selective pressures supports the maintenance of alleles of a Drosophila immune peptide

    Sarah R Mullinax, Andrea M Darby ... Robert L Unckless
    Genetic variation in an immune peptide is maintained by multiple selective forces including an interplay between systemic immunity, sex, and the microbiome.
    1. Cell Biology

    ACVR2A facilitates trophoblast cell invasion through TCF7/c-JUN pathway in pre-eclampsia progression

    Shujing Yang, Huanyao Liu ... Fang He
    ACVR2A downregulation disrupts the TCF7/c-JUN pathway, impairing trophoblast invasion and proliferation in pre-eclampsia, revealing a genetic susceptibility-associated mechanism of placental dysfunction.
    1. Biochemistry and Chemical Biology
    2. Microbiology and Infectious Disease

    Synonymous mutations in AAV Rep enhance genome packaging in a library selection

    Tasfia Azim, Dru Myerscough, Jonathan J Silberg
    Not revised
    Reviewed Preprint v1
    • Useful
    • Incomplete
    1. Developmental Biology

    SVEP1 enables efficient binding of Angiopoietin-2 to the TIE1 receptor, allowing receptor phosphorylation and downstream signaling

    Katharina Uphoff, Melina Hußmann ... Stefan Schulte-Merker
    Not revised
    Reviewed Preprint v1
    • Important
    • Incomplete
    1. Neuroscience

    Population-level morphological analysis of paired CO2- and odor-sensing olfactory neurons in D. melanogaster via volume electron microscopy

    Jonathan Choy, Shadi Charara ... Chih-Ying Su
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Convincing
    1. Cell Biology

    Aging-associated Increase of GATA4 levels in Articular Cartilage is Linked to Impaired Regenerative Capacity of Chondrocytes and Osteoarthritis

    Meagan J Makarczyk, Yiqian Zhang ... Hang Lin
    Not revised
    Reviewed Preprint v1
    • Important
    • Compelling
    1. Neuroscience

    Transdiagnostic compulsivity is associated with reduced reminder setting, only partially attributable to overconfidence

    Annika Boldt, Celine Ann Fox ... Sam Gilbert
    Highly compulsive individuals set fewer reminders, partly due to inflated confidence and partly due to compulsivity itself, revealing how individual differences shape the strategic reminder use in daily life.
    1. Epidemiology and Global Health
    2. Neuroscience

    Menopausal hormone therapy and the female brain: Leveraging neuroimaging and prescription registry data from the UK Biobank cohort

    Claudia Barth, Liisa AM Galea ... Ann-Marie G de Lange
    A big-data approach shows the effects of menopausal hormone therapy on female brain health might vary depending on the duration of use and history of gynaecological surgery.
    1. Neuroscience

    AgRP1 modulates breeding season-dependent feeding behavior in female medaka

    Yurika Tagui, Shingo Takeda ... Chie Umatani
    AgRP1, a feeding-related peptide in the brain, facilitates feeding behavior of female medaka in the breeding season, which is important for reproductive success.
    1. Microbiology and Infectious Disease

    A bacterial regulatory uORF senses multiple classes of ribosome-targeting antibiotics

    Gabriele Baniulyte, Joseph T Wade
    An upstream open-reading frame in Escherichia coli regulates expression of the downstream genes in response to diverse translation stresses.
    1. Microbiology and Infectious Disease

    Primosomal protein PriC rescues replication initiation stress by bypassing the DnaA-DnaB interaction step for DnaB helicase loading at oriC

    Ryusei Yoshida, Kazuma Korogi ... Tsutomu Katayama
    PriC provides a bypass mechanism for compromised helicase loading at the origin of the Escherichia coli chromosome, which ensures the robustness of the chromosome replication initiation.
    1. Cell Biology
    2. Developmental Biology

    Mutations that prevent phosphorylation of the BMP4 prodomain impair proteolytic maturation of homodimers leading to lethality in mice

    Hyung-Seok Kim, Mary L Sanchez ... Jan L Christian
    Phosphorylation of the BMP4 prodomain is required for proteolytic activation of BMP4 homodimers, but not BMP4/7 heterodimers.
    1. Cancer Biology

    Inhibition of p38-MK2 pathway enhances the efficacy of microtubule inhibitors in breast cancer cells

    Yu-Chia Chen, Mamoru Takada ... Aussie Suzuki
    Inhibiting the p38 MAPK-MK2 signaling pathway significantly boosts the efficacy of microtubule-targeting agents specifically in breast cancer cells, highlighting a potential new therapeutic strategy for improved cancer treatment.
    1. Cell Biology

    Force transmission through the inner kinetochore is enhanced by centromeric DNA sequences

    Elise Miedlar, Grace E Hamilton ... Trisha N Davis
    Biochemical reconstitution and laser trapping show that centromeric DNA sequences are important for the transmission of microtubule-based forces to chromosomes.
    1. Immunology and Inflammation

    Temperature-based MHC class-I multimer peptide exchange for human HLA-A, B and C

    Cilia R Pothast, Ian Derksen ... Ferenc A Scheeren
    Not revised
    Reviewed Preprint v1
    • Useful
    • Incomplete
    1. Neuroscience

    Vascular endothelial-specific loss of TGF-beta signaling as a model for choroidal neovascularization and central nervous system vascular inflammation

    Yanshu Wang, Amir Rattner ... Jeremy Nathans
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Solid
    1. Microbiology and Infectious Disease

    Identifying a novel mechanism of L-leucine uptake in Mycobacterium tuberculosis using a chemical genomic approach

    Nisheeth Agarwal, Himanshu Gogoi ... Bappaditya Dey
    Not revised
    Reviewed Preprint v1
    • Useful
    • Incomplete
    1. Biochemistry and Chemical Biology

    Gut Microbe-Derived Trimethylamine Shapes Circadian Rhythms Through the Host Receptor TAAR5

    Kala K Mahen, William J Massey ... J Mark Brown
    Not revised
    Reviewed Preprint v1
    • Important
    • Convincing
    1. Microbiology and Infectious Disease

    Type I interferon responses contribute to immune protection against mycobacterial infection

    Andrea Szydlo-Shein, Blanca Sanz-Magallón Duque de Estrada ... Gillian S Tomlinson
    Not revised
    Reviewed Preprint v1
    • Useful
    • Incomplete
    1. Neuroscience

    Endogenous oscillatory rhythms and interactive contingencies jointly influence infant attention during early infant-caregiver interaction

    Emily AM Phillips, Louise Goupil ... Sam V Wass
    Infant attention during naturalistic social interactions is supported by their own endogenous neural activity and extended with the micro-contingent behavioural responsivity of their caregiver.
    1. Structural Biology and Molecular Biophysics

    Structural mechanisms of PIP2 activation and SEA0400 inhibition in human cardiac sodium-calcium exchanger NCX1

    Jing Xue, Weizhong Zeng ... Youxing Jiang
    Cryo-EM structures of HsNCX1 in complex with either phosphatidylinositol 4,5-bisphosphate (a physiological activator) or SEA0400 (a pharmacological inhibitor) provide mechanistic insights into the cellular regulation and pharmacology of NCX proteins.
    1. Ecology
    2. Evolutionary Biology

    Decoupling both local and global abundance from global range size, challenging the abundance-occupancy relationship in birds

    Shinichi Nakagawa, William K Cornwell, Corey T Callaghan
    Analysis of 3 billion bird observations finds no intrinsic abundance-occupancy relationship, overturning a famous macroecological rule and redefining approaches to biodiversity assessment and conservation.
    1. Neuroscience

    Quantification of the effect of hemodynamic occlusion in two-photon imaging of mouse cortex

    Baba Yogesh, Matthias Heindorf ... Georg B Keller
    Hemodynamic occlusion introduces a spatially heterogenous confound to activity measurements using two-photon and widefield imaging in mouse cortex, and needs to be taken into consideration when interpreting functional imaging data.
    1. Ecology
    2. Evolutionary Biology

    Brochosomes as an antireflective camouflage coating for leafhoppers

    Wei Wu, Qianzhuo Mao ... Jian-Ping Chen
    Leafhoppers evade predators using nanostructured brochosomes that reduce ultraviolet reflectance through morphology shaped by four novel structural proteins originating from evolutionary duplication–divergence processes.
    1. Evolutionary Biology
    2. Immunology and Inflammation

    Evolutionary and functional analyses reveal a role for the RHIM in tuning RIPK3 activity across vertebrates

    Elizabeth J Fay, Kolya Isterabadi ... Matthew D Daugherty
    Combining phylogenetic analyses and functional assays to study the receptor interacting protein kinase family reveals conserved and non-conserved functions in immune signaling across vertebrates.
    1. Microbiology and Infectious Disease

    Oxydifficidin, a potent Neisseria gonorrhoeae antibiotic due to DedA-assisted uptake and ribosomal protein RplL sensitivity

    Jingbo Kan, Adrian Morales-Amador ... Sean F Brady
    Oxydifficidin presents potent activity against multidrug-resistant Neisseria gonorrhea with a new mode of action, which opens a new avenue for potentially addressing antibiotic resistant gonorrhea.
    1. Neuroscience

    Criterion placement threatens the construct validity of neural measures of consciousness

    Johannes Jacobus Fahrenfort, Philippa A Johnson ... Simon van Gaal
    The neural basis of consciousness is confounded by the mismatch between what participants report about their experience versus what they actually experience.
    1. Biochemistry and Chemical Biology

    Membrane curvature regulates Ups1 dependent phosphatidic acid transfer across lipid bilayers

    Fereshteh Sadeqi, Dexin Dong ... Michael Meinecke
    Not revised
    Reviewed Preprint v1
    • Fundamental
    • Convincing
    1. Structural Biology and Molecular Biophysics
    2. Chromosomes and Gene Expression

    Structural mechanism of strand exchange by the RAD51 filament

    Luay Joudeh, Robert E Appleby ... Luca Pellegrini
    Not revised
    Reviewed Preprint v1
    • Landmark
    • Compelling
    1. Cell Biology

    Optogenetic control of a GEF of RhoA uncovers a signaling switch from retraction to protrusion

    Jean de Seze, Maud Bongaerts ... Mathieu Coppey
    A single protein can switch cellular behaviors from protrusion to retraction based on its concentration and dynamics, revealing a novel mechanism for controlling antagonistic phenotypes in cell signaling.
    Version of Record
    Research Article
    • Important
    • Compelling
    • Convincing
    1. Cell Biology
    2. Microbiology and Infectious Disease

    Scrutinized lipid utilization disrupts Amphotericin-B responsiveness in clinical isolates of Leishmania donovani

    Supratim Pradhan, Dhruba Dhar ... Budhaditya Mukherjee
    Nutritional adaptations in Leishmania donovani enable persistent antimony resistance and reduced Amphotericin-B effectiveness by selectively exploiting host lipids and limiting cholesterol mobilization.
    1. Immunology and Inflammation
    2. Microbiology and Infectious Disease

    Phase transition of WTAP regulates m6A modification of interferon-stimulated genes

    Sihui Cai, Jie Zhou ... Jun Cui
    IFN-β-induced WTAP phase transition bridges STAT1 and MTC, which orchestrates m6A dynamics on ISG mRNAs to suppress excessive immune response and sustain immune homeostasis.
    1. Computational and Systems Biology
    2. Structural Biology and Molecular Biophysics

    Reliable protein–protein docking with AlphaFold, Rosetta, and replica exchange

    Ameya Harmalkar, Sergey Lyskov, Jeffrey J Gray
    New protein-protein docking algorithm combining deep learning (AlphaFold2) and physics (Rosetta and enhanced sampling) achieves high success rates.
    1. Neuroscience
    2. Structural Biology and Molecular Biophysics

    A Kv2 inhibitor combination reveals native neuronal conductances consistent with Kv2/KvS heteromers

    Robert G Stewart, Matthew James Marquis ... Jon T Sack
    Drugs are identified that unmask molecular origins of certain neuronal potassium currents, enabling functional analysis of previously indistinguishable potassium channel subtypes.
    1. Developmental Biology

    Comparative analysis of the syncytiotrophoblast in placenta tissue and trophoblast organoids using snRNA sequencing

    Madeline M Keenen, Liheng Yang ... Carolyn B Coyne
    Trophoblast organoids recapitulate syncytiotrophoblast nuclear heterogeneity and reveal environment-dependent gene regulation critical for placental hormone production and differentiation.
    1. Neuroscience

    An antisense oligonucleotide-based strategy to ameliorate cognitive dysfunction in the 22q11.2 Deletion Syndrome

    Pratibha Thakur, Martin Lackinger ... Joseph A Gogos
    Targeting EMC10 restores neuronal function in 22q11.2DS patient-derived neurons and reverses cognitive deficits in adult mice, highlighting its potential as a therapeutic strategy for mitigating disease-related cognitive impairments.
    1. Genetics and Genomics
    2. Microbiology and Infectious Disease

    Household clustering and seasonal genetic variation of Plasmodium falciparum at the community-level in The Gambia

    Marc-Antoine Guery, Sukai Ceesay ... Antoine Claessens
    Household clustering and seasonal parasite dynamics highlight the need to target asymptomatic carriers for community-based malaria elimination strategies.
    1. Microbiology and Infectious Disease

    Evolutionary unique N-glycan-dependent protein quality control system plays pivotal roles in cellular fitness and extracellular vesicle transport in Cryptococcus neoformans

    Catia Mota, Kiseung Kim ... Hyun Ah Kang
    Precise protein quality control in the endoplasmic reticulum is crucial for Cryptococcus neoformans pathogenicity by modulating glycoprotein processing and extracellular vesicle-mediated transport of virulence factors.
    1. Neuroscience

    Integration of head and body orientations in the macaque superior temporal sulcus is stronger for upright bodies

    Yordanka Zafirova, Rufin Vogels
    Head and body orientation cues are integrated by macaque superior temporal sulcus neurons, with stronger integration for upright monkey images.
    1. Developmental Biology

    Progressive mural cell deficiencies across the lifespan in a foxf2 model of Cerebral Small Vessel Disease

    Merry Faye E Graff, Emma EM Heeg, Sarah J Childs
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Compelling
    1. Cell Biology
    2. Cancer Biology

    GMCL1 Controls 53BP1 Stability and Modulates Paclitaxel Sensitivity in Cancer

    Yuki Kito, Tania J González-Robles ... Michele Pagano
    Not revised
    Reviewed Preprint v1
    • Inadequate
    1. Genetics and Genomics

    Mapping of in vivo cleavage sites uncovers a major role for yeast RNase III in regulating protein-coding genes

    Lee-Ann Notice-Sarpaning, Mathieu Catala ... Ambro van Hoof
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Solid
    1. Genetics and Genomics

    Gene expression variation across genetically identical individuals predicts reproductive traits

    Amy K Webster, John H Willis ... Patrick C Phillips
    Not revised
    Reviewed Preprint v1
    • Important
    • Compelling
    1. Cell Biology

    Extracellular vesicle-mediated release of bis(monoacylglycerol)phosphate is regulated by LRRK2 and Glucocerebrosidase activity

    Elsa Meneses-Salas, Marianna Arnold ... Albert Lu
    Not revised
    Reviewed Preprint v1
    • Useful
    • Incomplete
    • Inadequate
    1. Developmental Biology
    2. Neuroscience

    Commissureless acts as a substrate adapter in a conserved Nedd4 E3 ubiquitin ligase pathway to promote axon growth across the midline

    Kelly G Sullivan, Greg J Bashaw
    Commissureless works with the Nedd4 E3 ubiquitin ligase to transiently degrade the Robo1 receptor to allow commissural axons to cross the midline.
    Version of Record
    Research Article
    • Fundamental
    • Compelling
    • Convincing
    1. Cancer Biology
    2. Medicine

    Molecular feature-based classification of retroperitoneal liposarcoma: a prospective cohort study

    Mengmeng Xiao, Xiangji Li ... Li Min
    Identification of two molecularly distinct retroperitoneal liposarcoma subtypes, stratifiable via LEP and PTTG1 biomarkers, enables prognosis prediction and informs precision surgical strategies to improve clinical outcomes.
    1. Computational and Systems Biology

    Unsupervised reference-free inference reveals unrecognized regulated transcriptomic complexity in human single cells

    Roozbeh Dehghannasiri, George Henderson ... Julia Salzman
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Solid
    1. Evolutionary Biology

    Forecasting protein evolution by integrating birth-death population models with structurally constrained substitution models

    David Ferreiro, Luis Daniel González-Vázquez ... Miguel Arenas
    Not revised
    Reviewed Preprint v1
    • Useful
    • Incomplete
    1. Genetics and Genomics

    Functional analysis across model systems implicates ribosomal proteins in growth and proliferation defects associated with hypoplastic left heart syndrome

    Tanja Nielsen, Anaïs Kervadec ... Alexandre R Colas
    Not revised
    Reviewed Preprint v1
    • Important
    • Convincing
    1. Evolutionary Biology

    Sending mixed signals: convergent iridescence and divergent chemical signals in sympatric sister-species of Amazonian butterflies

    Joséphine Ledamoisel, Bruno Buatois ... Violaine Llaurens
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Solid
    1. Immunology and Inflammation

    T-follicular helper cell profiles differ by malaria antigen and for children compared to adults

    Catherine Suzanne Forconi, Christina Nixon ... Ann M Moormann
    Pf-GARP antigen seems to be a better malaria vaccine candidate compared to PfSEA-1A, as it triggered the activation of cTFH17, involved in the maintenance of memory antibody responses in adults.
    1. Ecology

    Food-washing monkeys recognize the law of diminishing returns

    Jessica E Rosien, Luke D Fannin ... Amanda Tan
    Monkeys are sensitive to foods coated with tooth-damaging sand and will invest time and energy to eliminate sand, but dominance rank affects the effort allocated to cleaning behaviors.
    1. Cell Biology

    Periosteal skeletal stem cells can migrate into the bone marrow and support hematopoiesis after injury

    Tony Marchand, Kemi E Akinnola ... Kira Gritsman
    A femur transplantation model of bone marrow regeneration highlights the plasticity of periosteal skeletal stem cells and their ability to contribute to bone marrow niche regeneration, ultimately facilitating hematopoietic regeneration.
    1. Neuroscience

    Subcortical correlates of consciousness with human single neuron recordings

    Michael Pereira, Nathan Faivre ... Olaf Blanke
    Subcortical brain structures contain neurons encoding subjective reports of stimulus detection in human participants, suggesting a role for conscious perception.
    1. Microbiology and Infectious Disease

    Wag31, a membrane tether, is crucial for lipid homeostasis in mycobacteria

    Yogita Kapoor, Himani Khurana ... Vinay Kumar Nandicoori
    A novel function of Wag31 in membrane tethering and molecular dissection of the functions of its N- and C-terminal domains.
    1. Structural Biology and Molecular Biophysics

    A comprehensive antigen-antibody complex database unlocking insights into interaction interface

    Yuwei Zhou, Wenwen Liu ... Jian Huang
    AACDB provides a comprehensive, manually curated antigen-antibody interface dataset with rich metadata, interaction annotations, and therapeutic target annotations to advance antibody drug development.
    1. Neuroscience

    Locus coeruleus modulation of single-cell representation and population dynamics in the mouse prefrontal cortex during attentional switching

    Marco Nigro, Lucas Silva Tortorelli ... Hongdian Yang
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Incomplete
    1. Neuroscience

    Virtual Brain Inference (VBI): A flexible and integrative toolkit for efficient probabilistic inference on virtual brain models

    Abolfazl Ziaeemehr, Marmaduke Woodman ... Meysam Hashemi
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Solid
    1. Microbiology and Infectious Disease

    Chemostat culturing reduces fecal eukaryotic virus load and delays diarrhea after virome transplantation

    Simone Margaard Offersen, Signe Adamberg ... Anders Brunse
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Solid
    1. Neuroscience

    Cerebellar Purkinje cell stripe patterns reveal a differential vulnerability and resistance to cell loss during normal aging in mice

    Sarah G Donofrio, Cheryl Brandenburg ... Roy V Sillitoe
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Convincing
    1. Neuroscience

    Spatial periodicity in grid cell firing is explained by a neural sequence code of 2-D trajectories

    Rebecca RG, Giorgio A Ascoli ... Holger Dannenberg
    The characteristic hexagonal firing pattern of grid cells emerges as the most parsimonious solution to a trajectory code by cell sequences.
    1. Immunology and Inflammation

    Modeling hereditary diffuse leukoencephalopathy with axonal spheroids using microglia-sufficient brain organoids

    Wei Jie Wong, Yi Wen Zhu ... Florent Ginhoux
    Co-culture between donor-derived iPSC-induced macrophages and forebrain organoids revealed microglial impairment leading to the degenerative neuro-environment in HDLS.
    1. Cell Biology
    2. Neuroscience

    Glutamine catabolism supports amino acid biosynthesis and suppresses the integrated stress response to promote photoreceptor survival

    Moloy T Goswami, Eric Weh ... Thomas J Wubben
    For the first time, mouse models reveal the metabolic dependency of photoreceptors on glutamine catabolism in vivo and further demonstrate the flexibility of photoreceptors to utilize fuel sources beyond glucose.
    1. Structural Biology and Molecular Biophysics

    Cryo-EM structures of a pentameric ligand-gated ion channel in liposomes

    Vikram Dalal, Brandon K Tan ... Wayland WL Cheng
    Revised
    Reviewed Preprint v2
    • Valuable
    • Convincing
    1. Epidemiology and Global Health

    Shining light on the dark matter of pertussis: evidence for an asymptomatic carriage state from a longitudinal cohort of mother/infant dyads

    Christian E Gunning, Christopher J Gill, Pejman Rohani
    Not revised
    Reviewed Preprint v1
    • Important
    • Convincing
    1. Cancer Biology

    ME3BP-7 is a targeted cytotoxic agent that rapidly kills pancreatic cancer cells expressing high levels of monocarboxylate transporter MCT1

    Jordina Rincon-Torroella, Marco Dal Molin ... Surojit Sur
    Monocarboxylate transporter 1 overexpressed pancreatic cancers can be therapeutically targeted with ME3BP-7, a promising new agent with unique mode of action.
    1. Computational and Systems Biology

    Perturbation-response analysis of in silico metabolic dynamics revealed hard-coded responsiveness in the cofactors and network sparsity

    Yusuke Himeoka, Chikara Furusawa
    A computational study reveals that the kinetic models of Escherichia coli metabolism show strong responsiveness to perturbations and that it originates from cofactor dynamics and network sparsity.
    1. Immunology and Inflammation

    Unraveling the role of Ctla-4 in intestinal immune homeostasis through a novel Zebrafish model of inflammatory bowel disease

    Lulu Qin, Chongbin Hu ... Jianzhong Shao
    The generation of a Ctla-4-deficient zebrafish line has established a direct link between Ctla-4 and IBD in zebrafish.
    1. Microbiology and Infectious Disease

    Secretory leukocyte protease inhibitor influences periarticular joint inflammation in Borrelia burgdorferi-infected mice

    Qian Yu, Xiaotian Tang ... Erol Fikrig
    Secretory leukocyte protease inhibitor suppresses Borrelia burgdorferi infection-induced periarticular inflammation in mice by maintaining anti-protease–protease balance.
    1. Neuroscience

    Flower/FLWR-1 regulates neuronal activity via the plasma membrane Ca2+ ATPase to promote recycling of synaptic vesicles

    Marius Seidenthal, Jasmina Redzovic ... Alexander Gottschalk
    Caenorhabditis elegans FLWR-1/Flower is required for efficient synaptic vesicle recycling and does so through a functional and possibly direct physical interaction with the plasma membrane Ca2+ ATPase, MCA-3.
    1. Medicine
    2. Neuroscience

    mTOR inhibition in Q175 Huntington’s disease model mice facilitates neuronal autophagy and mutant huntingtin clearance

    Philip Stavrides, Chris N Goulbourne ... Dun-Sheng Yang
    ALP alterations in Q175 brains are late-onset, mild, existing at the later phases of the pathway, and stimulating autophagy at early disease progression enhances mHTT clearance to ameliorate HD pathology.
    1. Chromosomes and Gene Expression

    MagIC-Cryo-EM, structural determination on magnetic beads for scarce macromolecules in heterogeneous samples

    Yasuhiro Arimura, Hide A Konishi, Hironori Funabiki
    A technique that enables single-particle cryo-EM analysis of targets on a magnetic bead and a particle curation method that helps structural classification of small particles has been developed.
    1. Cell Biology
    2. Medicine

    Endometriosis is not the endometrium: Reviewing the over-representation of eutopic endometrium in endometriosis research

    Kate Gunther, Teagan Fisher ... Caroline Elizabeth Ford
    Nearly half of sequencing data labeled as endometriosis lacks true disease representation, highlighting the urgent need for more diverse and accurate tissue sampling to advance research in this underrepresented field.
    1. Cell Biology
    2. Microbiology and Infectious Disease

    A novel SUN1-ALLAN complex coordinates segregation of the bipartite MTOC across the nuclear envelope during rapid closed mitosis in Plasmodium berghei

    Mohammad Zeeshan, Igor Blatov ... Rita Tewari
    The SUN1-ALLAN complex serves as a nuclear envelope–spanning tether that coordinates the segregation of a bipartite microtubule organising center (MTOC) during the unusual mitosis of Plasmodium.
    1. Neuroscience

    Hierarchical encoding of natural sounds mixtures in ferret auditory cortex

    Agnès Landemard, Célian Bimbard, Yves Boubenec
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Solid
    1. Neuroscience

    A memory model of rodent spatial navigation in which place cells are memories arranged in a grid and grid cells are non-spatial

    David E Huber
    It is proposed that place cells are arranged in a hexagonal grid for large surfaces devoid of landmarks, which produces grid cell receptive fields as an artifact of memory retrieval.
    1. Structural Biology and Molecular Biophysics

    Structural and dynamic impacts of single-atom disruptions to guide RNA interactions within the recognition lobe of Geobacillus stearothermophilus Cas9

    Helen B Belato, Alexa L Knight ... George P Lisi
    Solution biophysics defines the influence of local dynamics and allosteric regulation on guide RNA binding affinity and DNA cleavage specificity in a thermophilic Cas9 from Geobacillus stearothermophilus.
    1. Stem Cells and Regenerative Medicine

    Human CD29+/CD56+ myogenic progenitors display tenogenic differentiation potential and facilitate tendon regeneration

    Xiexiang Shao, Xingzuan Lin ... Ping Hu
    Tendon regeneration is supported by human CD29+/CD56+ myogenic progenitors through tenogenic differentiation, representing a distinct stem cell population with therapeutic potential.
    1. Computational and Systems Biology
    2. Neuroscience

    MorphoCellSorter is an Andrews plot-based sorting approach to rank microglia according to their morphological features

    Sarah Benkeder, Son-Michel Dinh ... Jean-Christophe Comte
    MorphoCellSorter is a versatile, user-friendly tool that automates microglial morphology ranking, enabling standardized, reproducible analysis across diverse models, imaging techniques, and conditions using principal component analysis and Andrews plots.
    1. Neuroscience

    Sensitivity to visual features in inattentional blindness

    Makaela Nartker, Chaz Firestone ... Ian Phillips
    As a group, inattentionally blind participants can successfully report the location, color, and shape of stimuli they deny noticing, and exhibit a systematic bias to report not noticing.
    1. Biochemistry and Chemical Biology

    Crystal structure and catalytic mechanism of PL35 family glycosaminoglycan lyases with an ultrabroad substrate spectrum

    Lin Wei, Hai-Yan Cao ... Fuchuan Li
    The determination of GAGases structure facilitates the elucidation of the catalytic mechanism of PL35 family lyases and provides potential evidence for the hypothesis that GAG lyase evolved from alginate lyase.
    1. Neuroscience

    Cortical dynamics in hand/forelimb S1 and M1 evoked by brief photostimulation of the mouse’s hand

    Daniela Piña Novo, Mang Gao ... Gordon MG Shepherd
    'Phototactile' hand stimulation rapidly activates first the somatosensory then the motor cortex, broadly consistent with constraints suggested by the previously described circuit architecture of this transcortical loop.
    1. Ecology
    2. Evolutionary Biology

    Variation in albumin glycation rates in birds suggests resistance to relative hyperglycaemia rather than conformity to the pace of life syndrome hypothesis

    Adrián Moreno Borrallo, Sarahi Jaramillo Ortiz ... Francois Criscuolo
    Bird species with higher plasma glucose show comparatively lower albumin glycation, suggesting the evolution of glycation resistance mechanisms, and terrestrial carnivores present higher glycation than omnivores.
    1. Neuroscience

    Viral-mediated Pou5f1 (Oct4) overexpression and inhibition of Notch signaling synergistically induce neurogenic competence in mammalian Müller glia

    Nguyet Le, Sherine Awad ... Seth Blackshaw
    Viral-mediated Oct4 overexpression induces direct conversion of wildtype mammalian Müller glia to bipolar neurons, and this process is synergistically enhanced by loss of Notch signaling.
    1. Chromosomes and Gene Expression
    2. Genetics and Genomics

    Transcriptional coregulation in cis around a contact insulation site revealed by single-molecule microscopy

    Maciej A Kerlin, Ilham Aboulfath-Ladid ... Antoine Coulon
    Not revised
    Reviewed Preprint v1
    • Important
    • Solid
    1. Neuroscience

    Altered visual cortex excitatory/inhibitory ratio following transient congenital visual deprivation in humans

    Rashi Pant, Kabilan Pitchaimuthu ... Brigitte Röder
    Rare individuals treated for congenital cataracts demonstrated shifts in the visual cortex’s excitatory/inhibitory balance even decades post-surgery, reflected by alterations in the neurotransmitter concentration ratio and aperiodic electroencephalogram activity.
    1. Computational and Systems Biology
    2. Ecology

    Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

    Iva Veseli, Yiqun T Chen ... A Murat Eren
    Higher biosynthetic capacity of gut microbes in individuals diagnosed with noncommunicable diseases or taking antibiotics suggests that diversity loss and 'dysbiosis' result from microbiome restructuring in response to ecosystem disruption.
    1. Cell Biology

    Insufficiency of 40S ribosomal proteins, RPS26 and RPS25, negatively affects biosynthesis of polyglycine-containing proteins in fragile-X associated conditions

    Katarzyna Tutak, Izabela Broniarek ... Krzysztof Sobczak
    Identification of ribosomal proteins RPS26 and RPS25, along with chaperone TSR2, as new important modifiers in the noncanonical translation process linked to fragile X premutation disorders.
    1. Cancer Biology

    TopBP1 biomolecular condensates: a new therapeutic target in advanced-stage colorectal cancer

    Laura Morano, Nadia Vezzio-Vié ... Jihane Basbous
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Convincing
    1. Cell Biology
    2. Developmental Biology

    Cross-species insemination reveals mouse sperm ability to enter and cross the fish micropyle

    Suma Garibova, Eva Stickler ... Matteo A Avella
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Incomplete
    1. Neuroscience

    Patchy Striatonigral Neurons Modulate Locomotor Vigor in Response to Environmental Valence

    Sarah Hawes, Bo Liang ... Huaibin Cai
    Not revised
    Reviewed Preprint v1
    • Important
    • Solid
    • Incomplete
    1. Computational and Systems Biology
    2. Cancer Biology

    Single-Cell Atlas of AML Reveals Age-Related Gene Regulatory Networks in t(8;21) AML

    Jessica Whittle, Stefan Meyer ... Mudassar Iqbal
    Not revised
    Reviewed Preprint v1
    • Useful
    • Incomplete
    1. Cell Biology

    scRNA-seq and scATAC-seq reveal that Sertoli cell mediates spermatogenesis disorders through stage-specific communications in non-obstructive azoospermia

    Shimin Wang, Hongxian Wang ... Dong Zhao
    The specific interaction between Sertoli cell subtypes and germ cell subpopulations mediates spermatogenesis disorders in non-obstructive azoospermia.
    Version of Record
    Research Article
    • Valuable
    • Convincing
    • Incomplete
    1. Neuroscience

    Mapping serotonergic dynamics using drug-modulated molecular connectivity in rats

    Tudor M Ionescu, Mario Amend ... Kristina Herfert
    PET molecular connectivity is feasible, plausible, and delineates brain-wide pharmacologic effects not identified by BOLD functional connectivity.
    1. Cell Biology
    2. Developmental Biology

    Rudhira-mediated microtubule stability controls TGFβ signaling during mouse vascular development

    Divyesh Joshi, Preeti Jindal ... Maneesha S Inamdar
    The precise integration of endothelial TGFβ signaling and microtubule stability directs cardiovascular development.
    1. Genetics and Genomics

    Molecular requirements for C. elegans transgenerational epigenetic inheritance of pathogen avoidance

    Rachel Kaletsky, Rebecca S Moore ... Coleen T Murphy
    Deviating from established protocols is the most likely reason why Gainey et al. (2024) could not reproduce earlier results in a Caenorhabditis elegans transgenerational inheritance paradigm, and the earlier findings are also supported by tests with over 30 new genes.
    Version of Record
    Short Report
    • Fundamental
    • Compelling
    1. Developmental Biology

    Single nuclei RNA-sequencing of adult brain neurons derived from type 2 neuroblasts reveals transcriptional complexity in the insect central complex

    Derek G Epiney, Gonzalo Morales Chaya ... Chris Q Doe
    The central complex of the adult Drosophila brain, required for sensorimotor integration, is transcriptionally complex as detected by single-cell transcriptome analysis.
    1. Cell Biology
    2. Medicine

    AARS2 ameliorates myocardial ischemia via fine-tuning PKM2-mediated metabolism

    Zongwang Zhang, Lixia Zheng ... Jing-Wei Xiong
    AARS2 safeguards cardiomyocytes against ischemic injury by modulating PKM2-driven energy metabolism, revealing the AARS2-PKM2 axis as a previously unrecognized cardioprotective pathway in myocardial infarction.
    1. Computational and Systems Biology
    2. Neuroscience

    Sensorimotor delays constrain robust locomotion in a 3D kinematic model of fly walking

    Lili Karashchuk, Jing Shuang Li ... Bingni W Brunton
    A model that simulates realistic fly walking uses an anatomically-inspired layered architecture to achieve robust walking, quantifying the tolerance of this circuit to sensorimotor delays.
    1. Neuroscience

    A theory of brain-computer interface learning via low-dimensional control

    Jorge A Menéndez, Jay A Hennig ... Peter E Latham
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Convincing
    1. Chromosomes and Gene Expression

    Nuclear and cytosolic J-domain proteins provide synergistic control of Hsf1 at distinct phases of the heat shock response

    Carmen Ruger-Herreros, Lucia Svoboda ... Bernd Bukau
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Compelling
    1. Neuroscience

    Trends in self-citation rates in high-impact neurology, neuroscience, and psychiatry journals

    Matthew Rosenblatt, Saloni Mehta ... Dustin Scheinost
    Self-citation rates differed by geographic region, seniority, gender, and field, which may ultimately affect the perceived influence of authors in these subgroups in neuroscience literature.
    1. Microbiology and Infectious Disease

    Adaptation of CD4 in gorillas and chimpanzees conveyed resistance to simian immunodeficiency viruses

    Cody J Warren, Arturo Barbachano-Guerrero ... Sara L Sawyer
    Resurrection of ancient forms of CD4 reveals how retroviruses have placed selective pressure on this gene in apes, acting to propagate infection-resistant alleles.
    1. Immunology and Inflammation

    Reprogramming of GM-CSF-dependent alveolar macrophages through GSK3 activity modulation

    Israel Ríos, Cristina Herrero ... Angel L Corbí
    Chemical inhibition or genetic downregulation of glycogen synthase kinase-3 reprograms human monocyte-derived macrophages by enhancing their anti-inflammatory, homeostatic, and reparative functions.
    Version of Record
    Research Article
    • Important
    • Compelling
    • Convincing
    1. Immunology and Inflammation

    Thymic dendritic cell-derived IL-27p28 promotes the establishment of functional bias against IFN-γ production in newly generated CD4+ T cells through STAT1-related epigenetic mechanisms

    Jie Zhang, Hui Tang ... Yu Zhang
    Dendritic cell (DC)-derived IL-27 establishes CD4+ T cell bias against IFN-γ via STAT1 and epigenetics, linking thymic development to autoimmune mechanisms.
    1. Structural Biology and Molecular Biophysics

    Structure, function and assembly of soybean primary cell wall cellulose synthases

    Ruoya Ho, Pallinti Purushotham ... Jochen Zimmer
    Structural and biochemical analyses suggest the association of homotrimeric CesAs of different isoforms into cellulose biosynthesis complexes via their class-specific regions.
    1. Neuroscience
    2. Computational and Systems Biology

    A Stimulus-Computable Model for Audiovisual Perception and Spatial Orienting in Mammals

    Cesare V Parise
    Not revised
    Reviewed Preprint v1
    • Important
    • Convincing
    • Incomplete
    1. Ecology
    2. Evolutionary Biology

    Fitness drivers of division of labor in vertebrates

    Irene García-Ruiz, Dustin Rubenstein
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Incomplete
    1. Neuroscience

    Cellular and synaptic organization of the Octopus vertical lobe

    Flavie Bidel, Yaron Meirovitch ... Binyamin Hochner
    Not revised
    Reviewed Preprint v1
    • Important
    • Solid
    1. Physics of Living Systems

    Collective epithelial migration mediated by the unbinding of hexatic defects

    Dimitrios Krommydas, Livio Nicola Carenza, Luca Giomi
    Not revised
    Reviewed Preprint v1
    • Important
    • Solid
    1. Microbiology and Infectious Disease
    2. Physics of Living Systems

    Observation of persister cell histories reveals diverse modes of survival in antibiotic persistence

    Miki Umetani, Miho Fujisawa ... Yuichi Wakamoto
    Time-lapse analyses of millions of antibiotic-stressed Escherichia coli characterize the diverse single-cell dynamics of persister cells that depend on antibiotics, culture conditions, and pre-exposure history.
    1. Neuroscience

    Dual-color optical activation and suppression of neurons with high temporal precision

    Noëmie Mermet-Joret, Andrea Moreno ... Sadegh Nabavi
    An optogenetic system capable of precise, high-frequency neuronal excitation using red pulsed light and rapid, millisecond inhibition using blue light.
    1. Neuroscience

    Role of posterior medial thalamus in the modulation of striatal circuitry and choice behavior

    Alex J Yonk, Ivan Linares-García ... David J Margolis
    A thalamic nucleus plays a previously unappreciated role in behavioral arousal and learning through its innervation of the dorsal striatum.
    1. Neuroscience

    Convolutional networks can model the functional modulation of the MEG responses associated with feed-forward processes during visual word recognition

    Marijn van Vliet, Oona Rinkinen ... Riitta Salmelin
    Convolutional neural networks can model the early feed-forward components of the MEG evoked response during visual word recognition.
    1. Immunology and Inflammation

    PIM kinase control of CD8 T cell protein synthesis and cell trafficking

    Julia M Marchingo, Laura Spinelli ... Doreen A Cantrell
    Parallel proteomics and transcriptomics data reveal that PIM kinases have a context-dependent role in promoting mouse CD8 T cell protein translation, effector function, and cell homing.
    1. Ecology

    Maternal behavior influences vocal practice and learning processes in the greater sac-winged bat

    Ahana Aurora Fernandez, Nora Serve ... Mirjam Knörnschild
    Non-tutorial feedback shapes song acquisition in a mammalian vocal learner.
    1. Immunology and Inflammation
    2. Microbiology and Infectious Disease

    SARS-CoV-2 nsp16 is regulated by host E3 ubiquitin ligases, UBR5 and MARCHF7

    Li Tian, Zongzheng Zhao ... Zhaolong Li
    E3 ligases UBR5 and MARCHF7 restrict SARS-CoV-2 replications through targeting nsp16.
    1. Cancer Biology
    2. Genetics and Genomics

    Transcriptional pattern enriched for synaptic signaling is associated with shorter survival of patients with high-grade serous ovarian cancer

    Arkajyoti Bhattacharya, Thijs S Stutvoet ... Rudolf SN Fehrmann
    Independent component analysis of ovarian cancer transcriptomes reveals distinct transcriptional patterns associated with overall survival.
    1. Plant Biology

    Making plant tissue accessible for cryo-electron tomography

    Matthias Pöge, Marcel Dickmanns ... Wolfgang Baumeister
    Not revised
    Reviewed Preprint v1
    • Important
    • Solid
    1. Cell Biology

    p66Shc Mediates SUMO2-induced Endothelial Dysfunction

    Jitendra Kumar, Shravan K Uppulapu ... Santosh Kumar
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Compelling
    • Solid
    1. Cancer Biology

    Causal associations between plasma proteins and prostate cancer: a Proteome-Wide Mendelian Randomization

    Chen Lin, Rong Zhuona ... Pang Xiaocong
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Solid
    1. Structural Biology and Molecular Biophysics

    Multiphase separation in postsynaptic density regulated by membrane geometry via interaction valency and volume

    Risa Yamada, Giovanni B Brandani, Shoji Takada
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Solid
    • Incomplete
    1. Neuroscience

    Chronic stress impairs autoinhibition in neurons of the locus coeruleus to increase asparagine endopeptidase activity

    Hiroki Toyoda, Doyun Kim ... Youngnam Kang
    Not revised
    Reviewed Preprint v1
    • Fundamental
    • Compelling
    1. Neuroscience

    Disinformation elicits learning biases

    Juan Vidal-Perez, Raymond J Dolan, Rani Moran
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Incomplete
    1. Medicine
    2. Epidemiology and Global Health

    Five-Year Survival Outcomes for Breast Cancer Patients Across Continental Africa: A Contemporary Review of Literature with Meta Analysis

    Augustina Badu-Peprah, Ernest Kissi Kontor ... Nityanand Jain
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Solid
    1. Chromosomes and Gene Expression
    2. Cancer Biology

    Conserved and Unique Features of Terminal Telomeric Sequences in ALT-Positive Cancer Cells

    Benura Azeroglu, Wei Wu ... Eros Lazzerini Denchi
    Not revised
    Reviewed Preprint v1
    • Fundamental
    • Compelling
    1. Genetics and Genomics
    2. Neuroscience

    Drosophila epidermal cells are intrinsically mechanosensitive and modulate nociceptive behavioral outputs

    Jiro Yoshino, Sonali S Mali ... Jay Z Parrish
    Epidermal mechanosensory responses contribute to acute detection of noxious mechanical stimuli and promote a form of prolonged mechanical hypersensitivity.
    1. Ecology

    Effects of blood meal source and seasonality on reproductive traits of Culex quinquefasciatus (Diptera: Culicidae)

    Kevin Alen Rucci, Gabriel Barco ... Adrián Díaz
    Interaction between blood meal source and seasonality shapes reproductive outputs in Culex quinquefasciatus mosquitoes, providing insight into mechanisms driving seasonal host shift.
    1. Evolutionary Biology
    2. Genetics and Genomics

    Seasonally migratory songbirds have different historic population size characteristics than resident relatives

    Kevin Winker, Kira Delmore
    Paleodemographic analyses in a hypothesis-testing framework show that the major life-history trait of seasonal migration has strong effects on long-term effective population sizes in a clade of songbirds.
    1. Genetics and Genomics
    2. Microbiology and Infectious Disease

    Rtf1 HMD domain facilitates global histone H2B monoubiquitination and regulates morphogenesis and virulence in the meningitis-causing pathogen Cryptococcus neoformans

    Yixuan Jiang, Ying Liang ... Youbao Zhao
    Rtf1 HMD is related to H2B ubiquitination and its downstream H3K4 methylation in both C. neoformans and C. deneoformans, thereby affecting its yeast-to-hypha transition and virulence.
    1. Genetics and Genomics
    2. Neuroscience

    Molecular and spatial transcriptomic classification of midbrain dopamine neurons and their alterations in a LRRK2G2019S model of Parkinson’s disease

    Zachary Gaertner, Cameron Oram ... Rajeshwar Awatramani
    A high-resolution atlas of the mouse dopaminergic system was obtained using single-nuclei RNA sequencing and spatial transcriptomics revealing molecular changes in a prodromal model of Parkinson's disease.
    1. Neuroscience

    Selective attention and sensitivity to auditory disturbances in a virtually real classroom

    Orel Levy, Shirley Libman Hackmon ... Elana Zion Golumbic
    Neural and gaze-based metrics provide novel insights into individual differences in attention and distractability in a simulated classroom.
    1. Neuroscience

    Reproducibility of in vivo electrophysiological measurements in mice

    International Brain Laboratory, Kush Banga ... Yizi Zhang
    An electrophysiology dataset generated by 10 laboratories from mice during perceptual decision-making reveals that reproducibility of systems neuroscience data requires stringent histological and electrophysiological quality-control criteria and careful analytical choices.
    1. Developmental Biology
    2. Genetics and Genomics

    Genetic evidence: zebrafish hoxba and hoxbb clusters are essential for the anterior-posterior positioning of pectoral fins

    Morimichi Kikuchi, Renka Fujii ... Akinori Kawamura
    Not revised
    Reviewed Preprint v1
    • Important
    • Convincing
    1. Developmental Biology

    A tissue boundary orchestrates the segregation of inner ear sensory organs

    Ziqi Chen, Magdalena Żak ... Nicolas Daudet
    Not revised
    Reviewed Preprint v1
    • Important
    • Solid
    • Incomplete
    1. Evolutionary Biology

    Genetic parallels in biomineralization of the calcareous sponge Sycon ciliatum and stony corals

    Oliver Voigt, Magdalena V Wilde ... Gert Wörheide
    Not revised
    Reviewed Preprint v1
    • Important
    • Compelling
    1. Biochemistry and Chemical Biology

    Blue-shifted ancyromonad channelrhodopsins for multiplex optogenetics

    Elena G Govorunova, Oleg A Sineshchekov ... John L Spudich
    Not revised
    Reviewed Preprint v1
    • Important
    • Convincing
    1. Biochemistry and Chemical Biology

    Epitope Sequence and Modification Fingerprints of Anti-Aβ Antibodies

    Ivan Talucci, Timon Leske ... Hans-Michael Maric
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Convincing
    1. Cell Biology
    2. Developmental Biology

    Krüppel Regulates Cell Cycle Exit and Limits Adult Neurogenesis of Mushroom Body Neural Progenitors in Drosophila

    Dongni Shao Chen, Jin Man ... Yuu Kimata
    Not revised
    Reviewed Preprint v1
    • Important
    • Solid
    • Incomplete
    1. Cell Biology
    2. Cancer Biology

    Mitochondrial ETF insufficiency drives neoplastic growth by selectively optimizing cancer bioenergetics

    David Papadopoli, Ranveer Palia ... Ivan Topisirovic
    Not revised
    Reviewed Preprint v1
    • Important
    • Solid
    1. Developmental Biology

    map3k1 is required for spatial restriction of progenitor differentiation in planarians

    Bryanna Isela-Inez Canales, Hunter O King, Peter W Reddien
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Convincing
    1. Cell Biology

    Ubiquitination-activated TAB–TAK1–IKK–NF-κB axis modulates gene expression for cell survival in the lysosomal damage response

    Akinori Endo, Chikage Takahashi ... Yukiko Yoshida
    Not revised
    Reviewed Preprint v1
    • Important
    • Convincing
    1. Biochemistry and Chemical Biology
    2. Computational and Systems Biology

    Identification and classification of ion-channels across the tree of life: Insights into understudied CALHM channels

    Rahil Taujale, Sung Jin Park ... Natarajan Kannan
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Incomplete
    • Inadequate
    1. Developmental Biology
    2. Physics of Living Systems

    Spiral-eyes: A soft active matter model of in vivo corneal epithelial cell migration

    Kaja Kostanjevec, Rastko Sknepnek ... Silke Henkes
    Not revised
    Reviewed Preprint v1
    • Useful
    • Incomplete
    1. Developmental Biology

    Endothelial Slit2 guides the Robo1-positive sympathetic innervation during heart development

    Juanjuan Zhao, Susann Bruche ... Mathilda TM Mommersteeg
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Solid
    1. Structural Biology and Molecular Biophysics

    Domain Coupling in Allosteric Regulation of SthK Measured Using Time-Resolved Transition Metal Ion FRET

    Pierce Eggan, Sharona E Gordon, William N Zagotta
    Revised
    Reviewed Preprint v2
    • Valuable
    • Compelling
    1. Immunology and Inflammation

    Diversity and functional specialization of oyster immune cells uncovered by integrative single-cell level investigations

    Sebastien De La Forest Divonne, Juliette Pouzadoux ... Emmanuel Vignal
    Single-cell and functional analyses uncover distinct immune cell types, revealing specialized functions and deepening insight into invertebrate cellular immunity.
    1. Neuroscience

    Dynamics of striatal action selection and reinforcement learning

    Jack W Lindsey, Jeffrey Markowitz ... Ashok Litwin-Kumar
    A theory of striatal synaptic plasticity separates activity related to learning and action execution into non-interfering subspaces.
    1. Medicine

    Characterisation and comparison of semen microbiota and bacterial load in men with infertility, recurrent miscarriage, or proven fertility

    Shahriar Mowla, Linda Farahani ... Channa N Jayasena
    There are common seminal microbiome clusters in both healthy men and those with infertility and recurrent pregnancy loss, and some specific microbiota perturbations are associated with impaired semen quality.
    1. Neuroscience

    Adolescent alcohol exposure promotes mechanical allodynia and alters synaptic function at inputs from the basolateral amygdala to the prelimbic cortex

    J Daniel Obray, Erik T Wilkes ... L Judson Chandler
    Adolescent alcohol exposure reduced basolateral amygdala-driven inhibition of pyramidal neurons projecting from the prefrontal cortex to the periaqueductal gray and increased inhibition of prefrontal parvalbumin interneurons.
    1. Neuroscience

    Non-feature-specific elevated responses and feature-specific backward replay in human brain induced by visual sequence exposure

    Tao He, Xizi Gong ... Fang Fang
    Visual sequence exposure induces non-feature-specific elevated responses and time-compressed feature-specific backward replay, revealing twofold brain plasticity in the human brain.
    1. Cancer Biology
    2. Developmental Biology

    VGLL2 and TEAD1 fusion proteins identified in human sarcoma drive YAP/TAZ-independent tumorigenesis by engaging EP300

    Susu Guo, Xiaodi Hu ... Junhao Mao
    Characterization of recurrent fusion proteins in rhabdomyosarcoma identified a Hippo pathway-independent mechanism involving VGLL2 and TEAD1 driving oncogenic transformation.
    1. Immunology and Inflammation

    Comprehensive analysis of nasal IgA antibodies induced by intranasal administration of the SARS-CoV-2 spike protein

    Kentarou Waki, Hideki Tani ... Nobuyuki Kurosawa
    Analysis of monoclonal immunoglobulin A (IgA) antibodies after intranasal immunization highlights the crucial role of secretory IgA in mucosal immunity, enhancing our understanding of how intranasal vaccines can protect against SARS-CoV-2 infection.
    1. Medicine
    2. Microbiology and Infectious Disease

    HERV activation segregates ME/CFS from fibromyalgia while defining a novel nosologic entity

    Karen Giménez-Orenga, Eva Martín-Martínez ... Elisa Oltra
    Transcriptomic profiling of HERV elements at the loci level differentiates ME/CFS, fibromyalgia, and their overlap, revealing distinct immuno-epigenetic landscapes.
    1. Neuroscience

    Evidence for systematic - yet task- and motor-contingent - rhythmicity of auditory perceptual judgements

    Cécile Fabio, Christoph Kayser
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Solid
    1. Genetics and Genomics

    Ribosomal RNA synthesis by RNA polymerase I is regulated by premature termination of transcription

    Chaïma Azouzi, Katrin Schwank ... Christophe Dez
    Not revised
    Reviewed Preprint v1
    • Important
    • Solid
    1. Cell Biology
    2. Immunology and Inflammation

    Monocyte-derived macrophage recruitment mediated by TRPV1 is required for eardrum wound healing

    Yunpei Zhang, Pingting Wang ... Xiaorui Shi
    Not revised
    Reviewed Preprint v1
    • Useful
    • Incomplete
    1. Immunology and Inflammation

    Interleukin 10 controls the balance between tolerance, pathogen elimination and immunopathology in birds

    Dominique Meunier, Ricardo Corona-Torres ... David A Hume
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Convincing
    1. Biochemistry and Chemical Biology

    Coupled equilibria of dimerization and lipid binding modulate SARS Cov 2 Orf9b interactions and interferon response

    CJ San Felipe, Jyoti Batra ... James S Fraser
    Not revised
    Reviewed Preprint v1
    • Important
    • Convincing
    1. Immunology and Inflammation

    Human giant GTPase GVIN1 forms an antimicrobial coatomer around the intracellular bacterial pathogen Burkholderia thailandensis

    Weilun Guo, Shruti S Apte ... Jörn Coers
    Not revised
    Reviewed Preprint v1
    • Fundamental
    • Compelling
    1. Structural Biology and Molecular Biophysics

    Protein Language Model Identifies Disordered, Conserved Motifs Driving Phase Separation

    Yumeng Zhang, Jared Zheng, Bin Zhang
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Compelling
    1. Cancer Biology

    Repression of the Wnt pathway effector TCF7L2 reverses lethal cachexia in mice with intestinal cancers

    Mei Ling Leong, Christiane Ruedl, Klaus Karjalainen
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Solid
    1. Neuroscience

    Heritability of movie-evoked brain activity and connectivity

    David C Gruskin, Daniel J Vieira ... Gaurav H Patel
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Incomplete
    1. Neuroscience

    Sparse innervation and local heterogeneity in the vibrissal corticostriatal projection

    Kenza Amroune, Lorenzo Fontolan ... Ingrid Bureau
    Not revised
    Reviewed Preprint v1
    • Fundamental
    • Compelling
    1. Evolutionary Biology

    Recurrent Mutations Drive the Rapid Evolution of Pesticide Resistance in the Two-spotted Spider Mite Tetranychus urticae

    Li-Jun Cao, Jin-Cui Chen ... Shu-Jun Wei
    Revised
    Reviewed Preprint v2
    • Important
    • Compelling
    1. Biochemistry and Chemical Biology
    2. Cell Biology

    SIRT2-mediated ACSS2 K271 deacetylation suppresses lipogenesis under nutrient stress

    Rezwana Karim, Wendi Teng ... Hening Lin
    A cross-talk is revealed between two branches of metabolisms, amino acid limitation suppressing fatty acid biosynthesis, via posttranslational modifications of an enzyme involved in fatty acid biosynthesis.
    1. Cell Biology

    MARK2 regulates Golgi apparatus reorientation by phosphorylation of CAMSAP2 in directional cell migratio

    Peipei Xu, Rui Zhang ... Wenxiang Meng
    MARK2-mediated phosphorylation of CAMSAP2 dynamically controls Golgi orientation by altering microtubule anchoring and polarity during directional cell migration.
    1. Cancer Biology

    KDM5 demethylases suppress R-loop-mediated “viral mimicry” and DNA damage in breast cancer cells

    Lena Lau, Kurt Henderson ... Marie Classon
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Solid
    1. Neuroscience

    Single-cell type analysis of wing premotor circuits in the ventral nerve cord of Drosophila melanogaster

    Erica Ehrhardt, Samuel C Whitehead ... Wyatt Korff
    Not revised
    Reviewed Preprint v1
    • Important
    • Compelling
    1. Neuroscience

    Anti-drift pose tracker (ADPT), a transformer-based network for robust animal pose estimation cross-species

    Guoling Tang, Yaning Han ... Pengfei Wei
    ADPT enhances the robustness of animal pose estimation by minimizing keypoint tracking drift, enabling more accurate multi-animal tracking and facilitating refined behavioral analysis across species.
    1. Cancer Biology

    The context-dependent epigenetic and organogenesis programs determine 3D vs. 2D cellular fitness of MYC-driven murine liver cancer cells

    Jie Fang, Shivendra Singh ... Jun Yang
    Drastic differences in genetic and epigenetic fitness of MYC-driven cancer cells in 3D vs 2D culture.
    Version of Record
    Research Article
    • Important
    • Convincing
    • Incomplete
    1. Immunology and Inflammation

    RAG suppresses group 2 innate lymphoid cells

    Aaron M Ver Heul, Madison Mack ... Brian S Kim
    Developmental imprinting controls innate type 2 immune function and allergic inflammation.
    1. Cell Biology

    Reprograming gene expression in ‘hibernating’ C. elegans involves the IRE-1/XBP-1 pathway

    Melanie Lianne Engelfriet, Yanwu Guo ... Rafal Ciosk
    Gene expression in nematodes during cold-induced dormancy is proposed to be regulated at the transcription level, partly involving the activation of unfolded protein response (UPR) through the IRE-1/XBP-1 signaling pathway.
    1. Developmental Biology
    2. Evolutionary Biology

    Differences in size and number of embryonic type II neuroblast lineages correlate with divergent timing of central complex development between beetle and fly

    Simon Rethemeier, Sonja Fritzsche ... Vera S Hunnekuhl
    Genetic labeling and molecular analyses characterize the dynamics of embryonic central complex-forming type II neuroblast lineages in Tribolium castaneum.
    1. Cell Biology

    Emergence of Dip2-mediated specific DAG-based PKC signalling axis in eukaryotes

    Sakshi Shambhavi, Sudipta Mondal ... Rajan Sankaranarayanan
    Dip2 regulates PKC signalling through specific DAG acyl chain compositions—a crucial pathway, which emerged approximately 1.2 billion years ago, marking the advent of selective DAG-based signalling in eukaryotes.
    1. Cell Biology
    2. Developmental Biology

    Shc1 cooperates with Frs2 and Shp2 to recruit Grb2 in FGF-induced lens development

    Qian Wang, Hongge Li ... Xin Zhang
    FGF signaling drives lens development by recruiting Grb2 through Shc1, Frs2, and Shp2 to regulate transcription and cytoskeletal arrangements.
    1. Ecology

    Quantifying feral pig interactions to inform disease transmission networks

    Tatiana Proboste, Abigail Turnlund ... Ricardo J Soares-Magalhaes
    Distinct seasonal peaks and sex-specific interactions reveal that cohesive female groups drive rapid local spread while male connectors facilitate intergroup transmission, underscoring the need for tailored disease control strategies.
    1. Neuroscience

    microRNA-19b regulates proliferation & patterning in the avian forebrain

    Archita Mishra, Suvimal Kumar Sindhu ... Jonaki Sen
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Incomplete
    1. Plant Biology

    Interdependence of plasma membrane nanoscale dynamics of a kinase and its cognate substrate underlies Arabidopsis response to viral infection

    Marie-Dominique Jolivet, Anne Flore Deroubaix ... Véronique Germain
    Dynamic lateral diffusion of the kinase and its substrate in the plasma membrane are crucial for a proper signaling response.
    1. Computational and Systems Biology

    Semantical and geometrical protein encoding toward enhanced bioactivity and thermostability

    Yang Tan, Bingxin Zhou ... Liang Hong
    The novel pre-training framework integrating sequential and geometric encoders significantly enhances protein engineering by accurately predicting variant effects and thermostability, outperforming existing zero-shot learning methods with minimal computational cost.
    1. Ecology

    The neuropeptide sulfakinin is a peripheral regulator of insect behavioral switch between mating and foraging

    Hong-Fei Li, Bao Dong ... Hong-Bo Jiang
    Sulfakinin-receptor1 signaling system alters the expression of odorant receptors in antenna to modulate the behavioral switch between foraging and mating in the oriental fruit fly.
    1. Neuroscience

    Temporal dynamics analysis reveals that concurrent working memory load eliminates the Stroop effect through disrupting stimulus-response mapping

    Yafen Li, Yixuan Lin ... Antao Chen
    The concurrent working memory load influences the Stroop conflict processing during the later stage of stimulus-response mapping.
    1. Cell Biology
    2. Medicine

    Disruption of the novel nested gene Aff3ir mediates disturbed flow-induced atherosclerosis in mice

    Shuo He, Lei Huang ... Jinlong He
    Endothelial-specific supplementation with Aff3ir-ORF2 significantly ameliorated disturbed flow-induced endothelial activation and the development of atherosclerotic plaques, highlighting its promising therapeutic potential for the treatment of atherosclerosis.
    1. Neuroscience

    Aberration correction in long GRIN lens-based microendoscopes for extended field-of-view two-photon imaging in deep brain regions

    Andrea Sattin, Chiara Nardin ... Tommaso Fellin
    A built-in solution for correcting optical aberrations in long (> 6 mm) gradient index (GRIN) lenses enables unbiased two-photon functional recordings of large neuronal populations in the deep mouse brain.
    1. Neuroscience

    Esr1-Dependent Signaling and Transcriptional Maturation in the Medial Preoptic Area of the Hypothalamus Shapes the Development of Mating Behavior during Adolescence

    Koichi Hashikawa, Yoshiko Hashikawa ... Garret D Stuber
    Not revised
    Reviewed Preprint v1
    • Valuable
    • Convincing
    1. Cell Biology
    2. Cancer Biology

    Human RAP2A Homolog of the Drosophila Asymmetric Cell Division Regulator Rap2l Targets the Stemness of Glioblastoma Stem Cells

    Maribel Franco, Ricardo Gargini ... Ana Carmena
    Not revised
    Reviewed Preprint v1
    • Useful
    • Incomplete
    1. Neuroscience

    CHROMAS: A Computational Pipeline to Track Chromatophores and Analyze their Dynamics

    Johann Ukrow, Mathieu DM Renard ... Gilles Laurent
    Not revised
    Reviewed Preprint v1
    • Important
    • Compelling
    1. Neuroscience

    Neural geometry from mixed sensorimotor selectivity for predictive sensorimotor control

    Yiheng Zhang, Yun Chen ... He Cui
    Target motion modulates monkey M1 neural dynamics during reaching, characterized by an orbital neural geometry composed of target-velocity-dependent tilting rings, suggesting that sensory information can be independently incorporated during motor generation.
    1. Neuroscience

    GPRC6A as a novel kokumi receptor responsible for enhanced taste preferences by ornithine

    Takashi Yamamoto, Kayoko Ueji ... Shinya Ugawa
    The enhanced taste and flavor of food induced by the addition of L-ornithine, referred to as 'kokumi' in humans, may be mediated by GPRC6A receptors expressed in taste cells.
    1. Evolutionary Biology

    Seasonal and comparative evidence of adaptive gene expression in mammalian brain size plasticity

    William R Thomas, Troy Richter ... Liliana M Davalos
    Adaptive gene expression in the common shrew hypothalamus connects energy homeostasis with reversible brain size changes in response to seasonal environmental challenges.
    1. Neuroscience

    Perceptual and attentional impairments of conscious access involve distinct neural mechanisms despite equal task performance

    Samuel Noorman, Timo Stein ... Simon van Gaal
    When performance is matched, the attentional blink allows for greater integration of complex stimulus features than masking, reflecting spared recurrent processing during attentional versus perceptual impairments of conscious access.
    1. Physics of Living Systems

    Physiological magnetic field strengths help magnetotactic bacteria navigate in simulated sediments

    Agnese Codutti, Mohammad A Charsooghi ... Stefan Klumpp
    Microfluidics experiments and simulations show that magnetotactic bacteria are adapted to the geomagnetic field strength for optimal navigation in sediment environments.
    1. Evolutionary Biology
    2. Neuroscience

    The first complete 3D reconstruction and morphofunctional mapping of an insect eye

    Anastasia A Makarova, Nicholas J Chua ... Alexey A Polilov
    Even the smallest compound eyes retain the functional specialization of ommatidia.
    1. Microbiology and Infectious Disease

    Complex system modeling reveals oxalate homeostasis is driven by diverse oxalate-degrading bacteria

    Sromona D Mukherjee, Carlos Batagello ... Aaron W Miller
    Microbiome composition through the redundancy of oxalate-degrading bacteria, critically influence oxalate metabolism, explaining variable outcomes of Oxalobacter formigenes therapy and offers insights for improving probiotic selection and clinical trial strategies.
    1. Structural Biology and Molecular Biophysics

    ATP-release pannexin channels are gated by lysophospholipids

    Erik Henze, Russell N Burkhardt ... Toshimitsu Kawate
    Lysophospholipids directly and reversibly activate pannexin channels, triggering the release of signaling molecules critical for inflammation.